(49 nodes) Cytoplasmic microtubule organization network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCDC88A	Coiled-coil domain containing 88A. (1900 aa)
	LOC102218395	Coiled-coil domain containing 88C. (1823 aa)
	camsap3	Calmodulin regulated spectrin-associated protein family, member 3. (1421 aa)
	M3ZLM1_XIPMA	Coiled-coil domain containing 88B. (866 aa)
	LOC102234686	Calmodulin regulated spectrin-associated protein 1b. (1542 aa)
	ccdc18	Coiled-coil domain containing 18. (1310 aa)
	LOC102224646	Coiled-coil domain containing 88Aa. (1155 aa)
	ccdc13	Coiled-coil domain containing 13. (572 aa)
	camsap2	Calmodulin regulated spectrin-associated protein family, member 2a. (1459 aa)
	katnbl1	Katanin p80 subunit B-like 1. (303 aa)
	pcm1	Pericentriolar material 1. (2051 aa)
	LOC102223811	Uncharacterized protein. (583 aa)
	LOC102224407	Dynactin 1a. (1265 aa)
	HOOK3	Hook microtubule tethering protein 3. (721 aa)
	LOC102224745	Hook microtubule-tethering protein 2. (708 aa)
	LOC102226711	Zgc:66447. (626 aa)
	fam193b	Family with sequence similarity 193 member B. (970 aa)
	slain2	SLAIN motif family, member 2. (624 aa)
	LOC102236791	Tubulin polymerization-promoting protein family member 3. (177 aa)
	clip3	CAP-GLY domain containing linker protein 3. (610 aa)
	wdr73	WD repeat domain 73. (375 aa)
	tubg1	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (451 aa)
	TPPP	Tubulin polymerization promoting protein. (242 aa)
	tubgcp2	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (870 aa)
	cep120	Centrosomal protein 120. (965 aa)
	clip2	CAP-GLY domain containing linker protein 2. (1024 aa)
	tubgcp5	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (984 aa)
	kif19	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (976 aa)
	tubgcp4	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (667 aa)
	kpnb1	Karyopherin (importin) beta 1. (876 aa)
	map10	HPHLAWLY domain-containing protein. (773 aa)
	cript	Cysteine-rich PDZ-binding protein. (101 aa)
	ENSXMAP00000022188	Calponin-homology (CH) domain-containing protein. (116 aa)
	LOC111610026	Uncharacterized protein. (476 aa)
	hook1	Hook microtubule-tethering protein 1. (716 aa)
	spast	Spastin; Belongs to the AAA ATPase family. (507 aa)
	clip1	CAP-GLY domain containing linker protein 1a. (2206 aa)
	numa1	Calponin-homology (CH) domain-containing protein. (2533 aa)
	LOC102236637	Katanin_con80 domain-containing protein. (323 aa)
	chp1	Calcineurin-like EF-hand protein 1. (195 aa)
	LOC102229636	Calmodulin regulated spectrin-associated protein family, member 2b. (1512 aa)
	clip4	CAP-Gly domain containing linker protein family member 4. (757 aa)
	LOC102226907	Uncharacterized protein. (1580 aa)
	ENSXMAP00000037133	Uncharacterized protein. (357 aa)
	ENSXMAP00000038255	Si:ch73-389b16.1. (131 aa)
	LOC102233746	Calmodulin regulated spectrin-associated protein 1a. (1558 aa)
	Tubgcp3	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (351 aa)
	dctn1	Dynactin 1b. (1249 aa)
	cep126	Uncharacterized protein. (938 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000022188	LOC102224646	ENSXMAP00000022188	ENSXMAP00000004689	Calponin-homology (CH) domain-containing protein.	Coiled-coil domain containing 88Aa.	0.585
ENSXMAP00000037133	LOC102224407	ENSXMAP00000037133	ENSXMAP00000008974	Uncharacterized protein.	Dynactin 1a.	0.640
ENSXMAP00000037133	dctn1	ENSXMAP00000037133	ENSXMAP00000040949	Uncharacterized protein.	Dynactin 1b.	0.640
ENSXMAP00000038255	ccdc13	ENSXMAP00000038255	ENSXMAP00000005834	Si:ch73-389b16.1.	Coiled-coil domain containing 13.	0.411
HOOK3	LOC102224745	ENSXMAP00000009108	ENSXMAP00000009152	Hook microtubule tethering protein 3.	Hook microtubule-tethering protein 2.	0.499
HOOK3	cep120	ENSXMAP00000009108	ENSXMAP00000015356	Hook microtubule tethering protein 3.	Centrosomal protein 120.	0.436
HOOK3	pcm1	ENSXMAP00000009108	ENSXMAP00000007829	Hook microtubule tethering protein 3.	Pericentriolar material 1.	0.420
LOC102224407	ENSXMAP00000037133	ENSXMAP00000008974	ENSXMAP00000037133	Dynactin 1a.	Uncharacterized protein.	0.640
LOC102224407	TPPP	ENSXMAP00000008974	ENSXMAP00000014110	Dynactin 1a.	Tubulin polymerization promoting protein.	0.487
LOC102224407	clip1	ENSXMAP00000008974	ENSXMAP00000029309	Dynactin 1a.	CAP-GLY domain containing linker protein 1a.	0.657
LOC102224407	clip2	ENSXMAP00000008974	ENSXMAP00000015357	Dynactin 1a.	CAP-GLY domain containing linker protein 2.	0.640
LOC102224646	ENSXMAP00000022188	ENSXMAP00000004689	ENSXMAP00000022188	Coiled-coil domain containing 88Aa.	Calponin-homology (CH) domain-containing protein.	0.585
LOC102224745	HOOK3	ENSXMAP00000009152	ENSXMAP00000009108	Hook microtubule-tethering protein 2.	Hook microtubule tethering protein 3.	0.499
LOC102224745	hook1	ENSXMAP00000009152	ENSXMAP00000024731	Hook microtubule-tethering protein 2.	Hook microtubule-tethering protein 1.	0.502
TPPP	LOC102224407	ENSXMAP00000014110	ENSXMAP00000008974	Tubulin polymerization promoting protein.	Dynactin 1a.	0.487
TPPP	dctn1	ENSXMAP00000014110	ENSXMAP00000040949	Tubulin polymerization promoting protein.	Dynactin 1b.	0.487
Tubgcp3	tubg1	ENSXMAP00000040338	ENSXMAP00000013880	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.997
Tubgcp3	tubgcp2	ENSXMAP00000040338	ENSXMAP00000014735	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.998
Tubgcp3	tubgcp4	ENSXMAP00000040338	ENSXMAP00000018292	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.990
Tubgcp3	tubgcp5	ENSXMAP00000040338	ENSXMAP00000016102	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.995