13 items (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102235995	RAP1A, member of RAS oncogene family b. (185 aa)
	LOC102220386	Lysine (K)-specific demethylase 6A, like. (1456 aa)
	LOC102228719	Mothers against decapentaplegic homolog. (503 aa)
	LOC102223832	Uncharacterized protein. (184 aa)
	kdm6a	Lysine (K)-specific demethylase 6A. (1443 aa)
	M4ARB7_XIPMA	Mesoderm posterior ba. (237 aa)
	LOC102225323	Mothers against decapentaplegic homolog. (563 aa)
	foxh1	Forkhead box H1. (502 aa)
	LOC102226994	Uncharacterized protein. (185 aa)
	ENSXMAP00000027437	BHLH domain-containing protein. (118 aa)
	SMAD4	Mothers against decapentaplegic homolog. (512 aa)
	tmed2	Transmembrane p24 trafficking protein 2. (207 aa)
	LOC102235534	Ripply transcriptional repressor 2. (163 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000027437	LOC102235534	ENSXMAP00000027437	ENSXMAP00000041846	BHLH domain-containing protein.	Ripply transcriptional repressor 2.	0.561
LOC102223832	LOC102226994	ENSXMAP00000006551	ENSXMAP00000026714	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC102223832	LOC102235995	ENSXMAP00000006551	ENSXMAP00000006006	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.900
LOC102225323	foxh1	ENSXMAP00000021000	ENSXMAP00000026175	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.661
LOC102226994	LOC102223832	ENSXMAP00000026714	ENSXMAP00000006551	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC102226994	LOC102235995	ENSXMAP00000026714	ENSXMAP00000006006	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.900
LOC102228719	SMAD4	ENSXMAP00000005074	ENSXMAP00000031130	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
LOC102228719	foxh1	ENSXMAP00000005074	ENSXMAP00000026175	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.661
LOC102235534	ENSXMAP00000027437	ENSXMAP00000041846	ENSXMAP00000027437	Ripply transcriptional repressor 2.	BHLH domain-containing protein.	0.561
LOC102235995	LOC102223832	ENSXMAP00000006006	ENSXMAP00000006551	RAP1A, member of RAS oncogene family b.	Uncharacterized protein.	0.900
LOC102235995	LOC102226994	ENSXMAP00000006006	ENSXMAP00000026714	RAP1A, member of RAS oncogene family b.	Uncharacterized protein.	0.900
SMAD4	LOC102228719	ENSXMAP00000031130	ENSXMAP00000005074	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
SMAD4	foxh1	ENSXMAP00000031130	ENSXMAP00000026175	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.661
foxh1	LOC102225323	ENSXMAP00000026175	ENSXMAP00000021000	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.661
foxh1	LOC102228719	ENSXMAP00000026175	ENSXMAP00000005074	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.661
foxh1	SMAD4	ENSXMAP00000026175	ENSXMAP00000031130	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.661