(9 nodes) Microtubule anchoring at centrosome network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	kif3a	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (701 aa)
	bbs4	Bardet-Biedl syndrome 4. (537 aa)
	cep19	Centrosomal protein 19. (158 aa)
	LOC102221630	Si:ch211-169p10.1. (549 aa)
	ENSXMAP00000030192	Uncharacterized protein. (368 aa)
	dctn1	Dynactin 1b. (1249 aa)
	LOC102224407	Dynactin 1a. (1265 aa)
	pcm1	Pericentriolar material 1. (2051 aa)
	LOC102231983	Coiled-coil domain containing 120. (645 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000030192	LOC102224407	ENSXMAP00000030192	ENSXMAP00000008974	Uncharacterized protein.	Dynactin 1a.	0.566
ENSXMAP00000030192	dctn1	ENSXMAP00000030192	ENSXMAP00000040949	Uncharacterized protein.	Dynactin 1b.	0.566
LOC102224407	ENSXMAP00000030192	ENSXMAP00000008974	ENSXMAP00000030192	Dynactin 1a.	Uncharacterized protein.	0.566
LOC102224407	bbs4	ENSXMAP00000008974	ENSXMAP00000010486	Dynactin 1a.	Bardet-Biedl syndrome 4.	0.463
LOC102224407	kif3a	ENSXMAP00000008974	ENSXMAP00000009178	Dynactin 1a.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.564
bbs4	LOC102224407	ENSXMAP00000010486	ENSXMAP00000008974	Bardet-Biedl syndrome 4.	Dynactin 1a.	0.463
bbs4	dctn1	ENSXMAP00000010486	ENSXMAP00000040949	Bardet-Biedl syndrome 4.	Dynactin 1b.	0.463
bbs4	kif3a	ENSXMAP00000010486	ENSXMAP00000009178	Bardet-Biedl syndrome 4.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.483
bbs4	pcm1	ENSXMAP00000010486	ENSXMAP00000007829	Bardet-Biedl syndrome 4.	Pericentriolar material 1.	0.862
dctn1	ENSXMAP00000030192	ENSXMAP00000040949	ENSXMAP00000030192	Dynactin 1b.	Uncharacterized protein.	0.566
dctn1	bbs4	ENSXMAP00000040949	ENSXMAP00000010486	Dynactin 1b.	Bardet-Biedl syndrome 4.	0.463
dctn1	kif3a	ENSXMAP00000040949	ENSXMAP00000009178	Dynactin 1b.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.564
kif3a	LOC102224407	ENSXMAP00000009178	ENSXMAP00000008974	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Dynactin 1a.	0.564
kif3a	bbs4	ENSXMAP00000009178	ENSXMAP00000010486	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Bardet-Biedl syndrome 4.	0.483
kif3a	dctn1	ENSXMAP00000009178	ENSXMAP00000040949	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Dynactin 1b.	0.564
pcm1	bbs4	ENSXMAP00000007829	ENSXMAP00000010486	Pericentriolar material 1.	Bardet-Biedl syndrome 4.	0.862