9 items (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102228719	Mothers against decapentaplegic homolog. (503 aa)
	apln	Apelin. (74 aa)
	rasl11b	RAS-like, family 11, member B. (244 aa)
	LOC102225323	Mothers against decapentaplegic homolog. (563 aa)
	pitx2	Homeobox protein. (312 aa)
	apela	Uncharacterized protein. (54 aa)
	foxh1	Forkhead box H1. (502 aa)
	SMAD4	Mothers against decapentaplegic homolog. (512 aa)
	LOC102233054	Odd-skipped related transcription factor 1. (272 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102225323	foxh1	ENSXMAP00000021000	ENSXMAP00000026175	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.661
LOC102228719	SMAD4	ENSXMAP00000005074	ENSXMAP00000031130	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
LOC102228719	foxh1	ENSXMAP00000005074	ENSXMAP00000026175	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.661
SMAD4	LOC102228719	ENSXMAP00000031130	ENSXMAP00000005074	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
SMAD4	foxh1	ENSXMAP00000031130	ENSXMAP00000026175	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.661
apela	apln	ENSXMAP00000025755	ENSXMAP00000013608	Uncharacterized protein.	Apelin.	0.646
apln	apela	ENSXMAP00000013608	ENSXMAP00000025755	Apelin.	Uncharacterized protein.	0.646
foxh1	LOC102225323	ENSXMAP00000026175	ENSXMAP00000021000	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.661
foxh1	LOC102228719	ENSXMAP00000026175	ENSXMAP00000005074	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.661
foxh1	SMAD4	ENSXMAP00000026175	ENSXMAP00000031130	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.661