STRINGSTRING
med14 med14 taf10 taf10 LOC102220925 LOC102220925 med1 med1 SRF SRF taf13 taf13 dhx36 dhx36 ercc6 ercc6 psmc6 psmc6 LOC102233582 LOC102233582 nkx2-5 nkx2-5 taf3 taf3 LOC102224043 LOC102224043 TAF4 TAF4 ENSXMAP00000031638 ENSXMAP00000031638 LOC102229912 LOC102229912 taf12 taf12 gtf2a1 gtf2a1 paxip1 paxip1 taf6 taf6 sub1 sub1 ercc1 ercc1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
med14Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1435 aa)
taf10Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (186 aa)
LOC102220925TAFH domain-containing protein. (919 aa)
med1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1745 aa)
SRFSerum response factor. (597 aa)
taf13TATA-box binding protein associated factor 13. (125 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1065 aa)
ercc6Excision repair cross-complementation group 6. (1470 aa)
psmc6Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family. (389 aa)
LOC102233582TATA-box binding protein associated factor 4. (934 aa)
nkx2-5NK2 homeobox 5. (319 aa)
taf3TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (939 aa)
LOC102224043TAFH domain-containing protein. (1023 aa)
TAF4TATA-box binding protein associated factor 4. (853 aa)
ENSXMAP00000031638General transcription factor IIA, 2. (71 aa)
LOC102229912MADS-box domain-containing protein. (469 aa)
taf12TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (174 aa)
gtf2a1General transcription factor IIA, 1. (391 aa)
paxip1PAX interacting (with transcription-activation domain) protein 1. (1068 aa)
taf6TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (637 aa)
sub1PC4 domain-containing protein. (124 aa)
ercc1Excision repair cross-complementation group 1. (350 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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