(26 nodes) Long-term synaptic potentiation network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	grin2a	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a. (1543 aa)
	grin2b	Uncharacterized protein. (1709 aa)
	LOC102235235	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (626 aa)
	RELN	Reelin. (3451 aa)
	LOC111605891	Si:ch73-330k17.3. (167 aa)
	serpine2	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family. (442 aa)
	LOC102219807	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b. (1957 aa)
	LOC102238048	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca. (1411 aa)
	LOC102220283	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a. (1973 aa)
	slc24a1	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (722 aa)
	LOC102228798	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (541 aa)
	LOC102237581	Uncharacterized protein. (1379 aa)
	syt12	Synaptotagmin XII. (423 aa)
	LOC102233660	Teashirt zinc finger homeobox 3a. (1112 aa)
	lrrtm1	Leucine rich repeat transmembrane neuronal 1. (524 aa)
	LOC102216912	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (691 aa)
	tshz3	Teashirt zinc finger homeobox 3b. (1229 aa)
	nfatc4	Nuclear factor of activated T cells 4. (842 aa)
	ENSXMAP00000030467	ANF_receptor domain-containing protein. (326 aa)
	SLC24A1	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (771 aa)
	lrrtm2	Leucine rich repeat transmembrane neuronal 2. (546 aa)
	LOC102217148	Proline-rich transmembrane protein 1. (239 aa)
	LOC102219965	Uncharacterized protein. (375 aa)
	LOC102225206	Neuroplastin b. (394 aa)
	LOC102226347	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b. (1594 aa)
	LOC102231331	MBD domain-containing protein. (1180 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000030467	LOC102231331	ENSXMAP00000030467	ENSXMAP00000037486	ANF_receptor domain-containing protein.	MBD domain-containing protein.	0.419
LOC102226347	grin2b	ENSXMAP00000037356	ENSXMAP00000006242	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.	Uncharacterized protein.	0.601
LOC102231331	ENSXMAP00000030467	ENSXMAP00000037486	ENSXMAP00000030467	MBD domain-containing protein.	ANF_receptor domain-containing protein.	0.419
LOC102231331	grin2b	ENSXMAP00000037486	ENSXMAP00000006242	MBD domain-containing protein.	Uncharacterized protein.	0.453
SLC24A1	slc24a1	ENSXMAP00000031636	ENSXMAP00000015802	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.905
grin2a	grin2b	ENSXMAP00000000229	ENSXMAP00000006242	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	Uncharacterized protein.	0.601
grin2b	LOC102226347	ENSXMAP00000006242	ENSXMAP00000037356	Uncharacterized protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.	0.601
grin2b	LOC102231331	ENSXMAP00000006242	ENSXMAP00000037486	Uncharacterized protein.	MBD domain-containing protein.	0.453
grin2b	grin2a	ENSXMAP00000006242	ENSXMAP00000000229	Uncharacterized protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	0.601
slc24a1	SLC24A1	ENSXMAP00000015802	ENSXMAP00000031636	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.905