STRINGSTRING
ecrg4 ecrg4 LOC102229912 LOC102229912 LOC102221328 LOC102221328 LOC102219013 LOC102219013 hmga1 hmga1 prelp prelp mapkapk5 mapkapk5 mnt mnt nsmce2 nsmce2 SRF SRF hmga2 hmga2 LOC102238117 LOC102238117 spns1 spns1 smc5 smc5 becn1 becn1 Wnt16 Wnt16 sirt1 sirt1 smc6 smc6 brca2 brca2 cdkn2b cdkn2b tbx3 tbx3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ecrg4ECRG4 augurin precursor b. (157 aa)
LOC102229912MADS-box domain-containing protein. (469 aa)
LOC102221328T-box transcription factor 3b. (498 aa)
LOC102219013MAX network transcriptional repressor b. (604 aa)
hmga1Uncharacterized protein. (123 aa)
prelpProline/arginine-rich end leucine-rich repeat protein. (379 aa)
mapkapk5MAPK activated protein kinase 5. (474 aa)
mntMAX network transcriptional repressor a. (595 aa)
nsmce2NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase. (230 aa)
SRFSerum response factor. (597 aa)
hmga2Uncharacterized protein. (114 aa)
LOC102238117Structural maintenance of chromosomes 6. (1086 aa)
spns1Spinster homolog 1 (Drosophila). (504 aa)
smc5Structural maintenance of chromosomes 5. (1073 aa)
becn1Beclin 1, autophagy related. (448 aa)
Wnt16Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (240 aa)
sirt1Sirtuin 1. (694 aa)
smc6Si:dkey-119f1.1. (1094 aa)
brca2BRCA2 DNA repair associated. (3052 aa)
cdkn2bCyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4). (124 aa)
tbx3T-box transcription factor 3a. (708 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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