STRINGSTRING
M3ZRR5_XIPMA M3ZRR5_XIPMA pym1 pym1 UPF2 UPF2 casc3 casc3 upf3b upf3b LOC102233713 LOC102233713 LOC102218128 LOC102218128 rbm8a rbm8a LOC102235710 LOC102235710 UPF1 UPF1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
M3ZRR5_XIPMACoiled-coil domain containing 9. (338 aa)
pym1PYM homolog 1, exon junction complex associated factor. (213 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1307 aa)
casc3Casc3 exon junction complex subunit. (767 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (453 aa)
LOC102233713Mago homolog, exon junction complex subunit. (149 aa)
LOC102218128UPF3A regulator of nonsense mediated mRNA decay. (464 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
LOC102235710Uncharacterized protein. (1084 aa)
UPF1UPF1 RNA helicase and ATPase. (1098 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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