(18 nodes) Sm domain, eukaryotic/archaea-type network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	lsm11	LSM11, U7 small nuclear RNA associated. (304 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	naa38	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (118 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (188 aa)
	ENSXMAP00000022713	Small nuclear ribonucleoprotein-associated protein. (234 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (109 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (125 aa)
	Snrpf	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (93 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000022713	LSM10	ENSXMAP00000022713	ENSXMAP00000020010	Small nuclear ribonucleoprotein-associated protein.	LSM10, U7 small nuclear RNA associated.	0.765
ENSXMAP00000022713	Snrpf	ENSXMAP00000022713	ENSXMAP00000015470	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein polypeptide F.	0.927
ENSXMAP00000022713	lsm11	ENSXMAP00000022713	ENSXMAP00000008254	Small nuclear ribonucleoprotein-associated protein.	LSM11, U7 small nuclear RNA associated.	0.670
ENSXMAP00000022713	lsm7	ENSXMAP00000022713	ENSXMAP00000020542	Small nuclear ribonucleoprotein-associated protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.417
ENSXMAP00000022713	snrpd1	ENSXMAP00000022713	ENSXMAP00000003379	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.973
ENSXMAP00000022713	snrpd2	ENSXMAP00000022713	ENSXMAP00000001004	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D2.	0.934
ENSXMAP00000022713	snrpd3	ENSXMAP00000022713	ENSXMAP00000001128	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D3.	0.976
ENSXMAP00000022713	snrpe	ENSXMAP00000022713	ENSXMAP00000008868	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.926
ENSXMAP00000022713	snrpg	ENSXMAP00000022713	ENSXMAP00000004358	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein G.	0.898
LSM10	ENSXMAP00000022713	ENSXMAP00000020010	ENSXMAP00000022713	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein-associated protein.	0.765
LSM10	Snrpf	ENSXMAP00000020010	ENSXMAP00000015470	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein polypeptide F.	0.998
LSM10	lsm1	ENSXMAP00000020010	ENSXMAP00000029430	LSM10, U7 small nuclear RNA associated.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.619
LSM10	lsm11	ENSXMAP00000020010	ENSXMAP00000008254	LSM10, U7 small nuclear RNA associated.	LSM11, U7 small nuclear RNA associated.	0.962
LSM10	lsm2	ENSXMAP00000020010	ENSXMAP00000031672	LSM10, U7 small nuclear RNA associated.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.953
LSM10	lsm3	ENSXMAP00000020010	ENSXMAP00000009167	LSM10, U7 small nuclear RNA associated.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.865
LSM10	lsm4	ENSXMAP00000020010	ENSXMAP00000032663	LSM10, U7 small nuclear RNA associated.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.949
LSM10	lsm5	ENSXMAP00000020010	ENSXMAP00000035325	LSM10, U7 small nuclear RNA associated.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.945
LSM10	lsm6	ENSXMAP00000020010	ENSXMAP00000009626	LSM10, U7 small nuclear RNA associated.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.939
LSM10	lsm7	ENSXMAP00000020010	ENSXMAP00000020542	LSM10, U7 small nuclear RNA associated.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.949
LSM10	lsm8	ENSXMAP00000020010	ENSXMAP00000025119	LSM10, U7 small nuclear RNA associated.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.948