13 items (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAD4	Mothers against decapentaplegic homolog. (512 aa)
	LOC102227900	Mothers against decapentaplegic homolog. (472 aa)
	LOC102225323	Mothers against decapentaplegic homolog. (563 aa)
	smad2	Mothers against decapentaplegic homolog. (474 aa)
	smad9	Mothers against decapentaplegic homolog. (467 aa)
	LOC102228719	Mothers against decapentaplegic homolog. (503 aa)
	LOC102224322	Mothers against decapentaplegic homolog. (467 aa)
	smad3	Mothers against decapentaplegic homolog. (425 aa)
	smad6	Mothers against decapentaplegic homolog. (492 aa)
	LOC102223630	Mothers against decapentaplegic homolog. (507 aa)
	SMAD3	Mothers against decapentaplegic homolog. (425 aa)
	smad7	Mothers against decapentaplegic homolog. (378 aa)
	smad1	Mothers against decapentaplegic homolog. (496 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102223630	LOC102224322	ENSXMAP00000002368	ENSXMAP00000004510	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.936
LOC102223630	LOC102225323	ENSXMAP00000002368	ENSXMAP00000021000	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.495
LOC102223630	LOC102227900	ENSXMAP00000002368	ENSXMAP00000022985	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.947
LOC102223630	LOC102228719	ENSXMAP00000002368	ENSXMAP00000005074	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.495
LOC102223630	SMAD3	ENSXMAP00000002368	ENSXMAP00000041069	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.936
LOC102223630	SMAD4	ENSXMAP00000002368	ENSXMAP00000031130	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.495
LOC102223630	smad1	ENSXMAP00000002368	ENSXMAP00000032082	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.491
LOC102223630	smad3	ENSXMAP00000002368	ENSXMAP00000003571	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.936
LOC102223630	smad6	ENSXMAP00000002368	ENSXMAP00000003558	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.902
LOC102223630	smad7	ENSXMAP00000002368	ENSXMAP00000037372	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.906
LOC102223630	smad9	ENSXMAP00000002368	ENSXMAP00000008618	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.947
LOC102224322	LOC102223630	ENSXMAP00000004510	ENSXMAP00000002368	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.936
LOC102224322	LOC102225323	ENSXMAP00000004510	ENSXMAP00000021000	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.786
LOC102224322	LOC102227900	ENSXMAP00000004510	ENSXMAP00000022985	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.448
LOC102224322	LOC102228719	ENSXMAP00000004510	ENSXMAP00000005074	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.977
LOC102224322	SMAD3	ENSXMAP00000004510	ENSXMAP00000041069	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
LOC102224322	SMAD4	ENSXMAP00000004510	ENSXMAP00000031130	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.979
LOC102224322	smad1	ENSXMAP00000004510	ENSXMAP00000032082	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.461
LOC102224322	smad3	ENSXMAP00000004510	ENSXMAP00000003571	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC102224322	smad6	ENSXMAP00000004510	ENSXMAP00000003558	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.944