(30 nodes) ABC transporter type 1, transmembrane domain superfamily network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102229795	Si:ch211-221f10.2. (1395 aa)
	LOC102219485	Uncharacterized protein. (1556 aa)
	LOC102236109	Uncharacterized protein. (1316 aa)
	abcb6	ATP-binding cassette, sub-family B (MDR/TAP), member 6a. (852 aa)
	ABCC4	ATP binding cassette subfamily C member 4. (1172 aa)
	abcd1	ATP-binding cassette, sub-family D (ALD), member 1. (754 aa)
	LOC102227239	ATP-binding cassette, sub-family C (CFTR/MRP), member 6a. (1510 aa)
	LOC102234479	ATP-binding cassette, sub-family D (ALD), member 2. (737 aa)
	LOC102234403	ATP-binding cassette, sub-family C (CFTR/MRP), member 4. (1346 aa)
	LOC102218671	ATP-binding cassette, sub-family B (MDR/TAP), member 8. (703 aa)
	abcb7	ATP-binding cassette, sub-family B (MDR/TAP), member 7. (748 aa)
	abcc10	ATP-binding cassette, sub-family C (CFTR/MRP), member 10. (1534 aa)
	abcb9	ATP-binding cassette, sub-family B (MDR/TAP), member 9. (801 aa)
	abcc12	ATP-binding cassette, sub-family C (CFTR/MRP), member 12. (1381 aa)
	abcb11	ATP-binding cassette, sub-family B (MDR/TAP), member 11a. (1267 aa)
	LOC102218606	Uncharacterized protein. (1422 aa)
	LOC102235587	ATP-binding cassette, sub-family B (MDR/TAP), member 11b. (1366 aa)
	abcc5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5. (1392 aa)
	LOC102218472	Transporter associated with antigen processing, subunit type a. (719 aa)
	LOC102236923	Transporter associated with antigen processing, subunit type t, teleost specific. (695 aa)
	abcb10	ATP-binding cassette, sub-family B (MDR/TAP), member 10. (706 aa)
	LOC102234902	ATP-binding cassette, sub-family C (CFTR/MRP), member 9. (1516 aa)
	tap1	Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP). (734 aa)
	abcc8	ATP-binding cassette, sub-family C (CFTR/MRP), member 8. (1561 aa)
	abcd4	ATP-binding cassette, sub-family D (ALD), member 4. (617 aa)
	cftr	Cystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer. (1503 aa)
	LOC102231469	ATP-binding cassette, sub-family C (CFTR/MRP), member 1. (1490 aa)
	LOC102231360	ATP-binding cassette, sub-family C (CFTR/MRP), member 3. (1580 aa)
	ABCB1	ATP binding cassette subfamily B member 1. (1294 aa)
	abcd3	ATP-binding cassette, sub-family D (ALD), member 3a. (659 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB1	abcb6	ENSXMAP00000034634	ENSXMAP00000003028	ATP binding cassette subfamily B member 1.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.471
ABCB1	abcb7	ENSXMAP00000034634	ENSXMAP00000009094	ATP binding cassette subfamily B member 1.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.521
ABCC4	abcb6	ENSXMAP00000003422	ENSXMAP00000003028	ATP binding cassette subfamily C member 4.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.423
ABCC4	abcb7	ENSXMAP00000003422	ENSXMAP00000009094	ATP binding cassette subfamily C member 4.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.425
LOC102218472	LOC102236923	ENSXMAP00000014629	ENSXMAP00000014778	Transporter associated with antigen processing, subunit type a.	Transporter associated with antigen processing, subunit type t, teleost specific.	0.905
LOC102218472	abcb6	ENSXMAP00000014629	ENSXMAP00000003028	Transporter associated with antigen processing, subunit type a.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.445
LOC102218472	abcb7	ENSXMAP00000014629	ENSXMAP00000009094	Transporter associated with antigen processing, subunit type a.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.575
LOC102218472	tap1	ENSXMAP00000014629	ENSXMAP00000018663	Transporter associated with antigen processing, subunit type a.	Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).	0.966
LOC102218606	abcb6	ENSXMAP00000013459	ENSXMAP00000003028	Uncharacterized protein.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.423
LOC102218606	abcb7	ENSXMAP00000013459	ENSXMAP00000009094	Uncharacterized protein.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.425
LOC102218671	abcb6	ENSXMAP00000006357	ENSXMAP00000003028	ATP-binding cassette, sub-family B (MDR/TAP), member 8.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.445
LOC102218671	abcb7	ENSXMAP00000006357	ENSXMAP00000009094	ATP-binding cassette, sub-family B (MDR/TAP), member 8.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.668
LOC102218671	abcd4	ENSXMAP00000006357	ENSXMAP00000022026	ATP-binding cassette, sub-family B (MDR/TAP), member 8.	ATP-binding cassette, sub-family D (ALD), member 4.	0.514
LOC102219485	abcb6	ENSXMAP00000002511	ENSXMAP00000003028	Uncharacterized protein.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.423
LOC102219485	abcb7	ENSXMAP00000002511	ENSXMAP00000009094	Uncharacterized protein.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.425
LOC102227239	LOC102231469	ENSXMAP00000004936	ENSXMAP00000030848	ATP-binding cassette, sub-family C (CFTR/MRP), member 6a.	ATP-binding cassette, sub-family C (CFTR/MRP), member 1.	0.902
LOC102227239	abcb6	ENSXMAP00000004936	ENSXMAP00000003028	ATP-binding cassette, sub-family C (CFTR/MRP), member 6a.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.423
LOC102227239	abcb7	ENSXMAP00000004936	ENSXMAP00000009094	ATP-binding cassette, sub-family C (CFTR/MRP), member 6a.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.425
LOC102229795	abcb6	ENSXMAP00000037963	ENSXMAP00000003028	Si:ch211-221f10.2.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.423
LOC102229795	abcb7	ENSXMAP00000037963	ENSXMAP00000009094	Si:ch211-221f10.2.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.425