6 items (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	grap2	GRB2 related adaptor protein 2a. (288 aa)
	LOC102233710	Uncharacterized protein. (195 aa)
	LOC102236890	Si:ch211-25d12.7. (253 aa)
	sla	Src like adaptor 1a. (275 aa)
	grb2	Growth factor receptor-bound protein 2b. (217 aa)
	LOC102227965	GRB2 related adaptor protein a. (216 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102227965	grb2	ENSXMAP00000012404	ENSXMAP00000004986	GRB2 related adaptor protein a.	Growth factor receptor-bound protein 2b.	0.411
LOC102233710	grb2	ENSXMAP00000036292	ENSXMAP00000004986	Uncharacterized protein.	Growth factor receptor-bound protein 2b.	0.413
LOC102236890	grap2	ENSXMAP00000022313	ENSXMAP00000000013	Si:ch211-25d12.7.	GRB2 related adaptor protein 2a.	0.480
grap2	LOC102236890	ENSXMAP00000000013	ENSXMAP00000022313	GRB2 related adaptor protein 2a.	Si:ch211-25d12.7.	0.480
grap2	grb2	ENSXMAP00000000013	ENSXMAP00000004986	GRB2 related adaptor protein 2a.	Growth factor receptor-bound protein 2b.	0.867
grb2	LOC102227965	ENSXMAP00000004986	ENSXMAP00000012404	Growth factor receptor-bound protein 2b.	GRB2 related adaptor protein a.	0.411
grb2	LOC102233710	ENSXMAP00000004986	ENSXMAP00000036292	Growth factor receptor-bound protein 2b.	Uncharacterized protein.	0.413
grb2	grap2	ENSXMAP00000004986	ENSXMAP00000000013	Growth factor receptor-bound protein 2b.	GRB2 related adaptor protein 2a.	0.867