(40 nodes) Transport of Mature mRNA Derived from an Intronless Transcript network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (654 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (296 aa)
	LOC102237095	Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family. (215 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2281 aa)
	seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (383 aa)
	nup153	Nucleoporin 153. (1493 aa)
	WDR33	WD repeat domain 33. (892 aa)
	nup155	Nucleoporin 155. (1346 aa)
	NUP62	Nucleoporin 62. (549 aa)
	nup188	Nucleoporin 188. (1628 aa)
	M3ZX48_XIPMA	Uncharacterized protein. (352 aa)
	nup50	Nucleoporin 50. (446 aa)
	LOC102236588	Nucleoporin 42. (425 aa)
	nup214	Nup214_FG domain-containing protein. (1990 aa)
	LOC102217946	Aly/REF export factor. (272 aa)
	ndc1	NDC1 transmembrane nucleoporin. (669 aa)
	pom121	POM121 transmembrane nucleoporin. (1160 aa)
	nup133	Nucleoporin 133. (1138 aa)
	LOC102230854	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family. (194 aa)
	LOC102220164	RRM domain-containing protein. (242 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (796 aa)
	M4AWA9_XIPMA	Translocated promoter region a, nuclear basket protein. (1776 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
	nup88	Nucleoporin 88. (721 aa)
	nup37	Nucleoporin 37. (326 aa)
	ENSXMAP00000021805	Uncharacterized protein. (210 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	ENSXMAP00000023550	Peptidase S59 domain-containing protein. (211 aa)
	rae1	Ribonucleic acid export 1. (369 aa)
	LOC102230982	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family. (210 aa)
	ENSXMAP00000024626	Uncharacterized protein. (312 aa)
	nup43	Nucleoporin 43. (370 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (518 aa)
	Nup98	Nup96 domain-containing protein. (374 aa)
	nup58	Nucleoporin 58. (594 aa)
	LOC102218559	RAN binding protein 2. (2916 aa)
	nup210	Nucleoporin 210. (1881 aa)
	nup160	Nucleoporin 160. (1416 aa)
	NUP54	Nucleoporin 54. (621 aa)
	Nup205	Uncharacterized protein. (366 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000021805	ENSXMAP00000023550	ENSXMAP00000021805	ENSXMAP00000023550	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.955
ENSXMAP00000021805	ENSXMAP00000024626	ENSXMAP00000021805	ENSXMAP00000024626	Uncharacterized protein.	Uncharacterized protein.	0.985
ENSXMAP00000021805	LOC102217946	ENSXMAP00000021805	ENSXMAP00000012237	Uncharacterized protein.	Aly/REF export factor.	0.679
ENSXMAP00000021805	LOC102218559	ENSXMAP00000021805	ENSXMAP00000034618	Uncharacterized protein.	RAN binding protein 2.	0.999
ENSXMAP00000021805	LOC102220164	ENSXMAP00000021805	ENSXMAP00000018123	Uncharacterized protein.	RRM domain-containing protein.	0.679
ENSXMAP00000021805	LOC102236588	ENSXMAP00000021805	ENSXMAP00000010673	Uncharacterized protein.	Nucleoporin 42.	0.596
ENSXMAP00000021805	M3ZX48_XIPMA	ENSXMAP00000021805	ENSXMAP00000006792	Uncharacterized protein.	Uncharacterized protein.	0.955
ENSXMAP00000021805	M4AWA9_XIPMA	ENSXMAP00000021805	ENSXMAP00000018754	Uncharacterized protein.	Translocated promoter region a, nuclear basket protein.	0.916
ENSXMAP00000021805	NCBP1	ENSXMAP00000021805	ENSXMAP00000018313	Uncharacterized protein.	Nuclear cap binding protein subunit 1.	0.726
ENSXMAP00000021805	NUP54	ENSXMAP00000021805	ENSXMAP00000041182	Uncharacterized protein.	Nucleoporin 54.	0.986
ENSXMAP00000021805	NUP62	ENSXMAP00000021805	ENSXMAP00000005170	Uncharacterized protein.	Nucleoporin 62.	0.979
ENSXMAP00000021805	Nup205	ENSXMAP00000021805	ENSXMAP00000041768	Uncharacterized protein.	Uncharacterized protein.	0.988
ENSXMAP00000021805	Nup98	ENSXMAP00000021805	ENSXMAP00000032029	Uncharacterized protein.	Nup96 domain-containing protein.	0.955
ENSXMAP00000021805	WDR33	ENSXMAP00000021805	ENSXMAP00000004198	Uncharacterized protein.	WD repeat domain 33.	0.643
ENSXMAP00000021805	aaas	ENSXMAP00000021805	ENSXMAP00000029480	Uncharacterized protein.	Achalasia, adrenocortical insufficiency, alacrimia.	0.977
ENSXMAP00000021805	ndc1	ENSXMAP00000021805	ENSXMAP00000012914	Uncharacterized protein.	NDC1 transmembrane nucleoporin.	0.954
ENSXMAP00000021805	nup133	ENSXMAP00000021805	ENSXMAP00000014178	Uncharacterized protein.	Nucleoporin 133.	0.999
ENSXMAP00000021805	nup153	ENSXMAP00000021805	ENSXMAP00000003443	Uncharacterized protein.	Nucleoporin 153.	0.982
ENSXMAP00000021805	nup155	ENSXMAP00000021805	ENSXMAP00000005128	Uncharacterized protein.	Nucleoporin 155.	0.987
ENSXMAP00000021805	nup160	ENSXMAP00000021805	ENSXMAP00000041035	Uncharacterized protein.	Nucleoporin 160.	0.999