46 items (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lrch1	Leucine-rich repeats and calponin homology (CH) domain containing 1. (790 aa)
	vat1l	Vesicle amine transport 1-like. (413 aa)
	Bcl2l14	Uncharacterized protein. (186 aa)
	cryz	Crystallin, zeta (quinone reductase). (371 aa)
	LOC102221052	CHM Rab escort protein. (697 aa)
	LOC102232876	Uncharacterized protein. (606 aa)
	prelid3a	PRELI domain containing 3A. (179 aa)
	LOC102218210	Leucine-rich repeats and calponin homology (CH) domain containing 4. (710 aa)
	LOC102231309	Zgc:73226. (182 aa)
	ndrg3	Ndrg family member 3a. (420 aa)
	ndrg4	NDRG family member 4. (437 aa)
	cryzl1	Crystallin, zeta (quinone reductase)-like 1. (346 aa)
	rtn4ip1	Reticulon 4 interacting protein 1. (403 aa)
	bcl6b	BCL6B transcription repressor. (534 aa)
	aifm2	Apoptosis inducing factor mitochondria associated 2. (375 aa)
	bcl6	BCL6A transcription repressor a. (745 aa)
	atm	ATM serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2875 aa)
	PRELID3B	PRELI domain containing 3B. (193 aa)
	ptar1	Protein prenyltransferase alpha subunit repeat containing 1. (456 aa)
	triap1	TP53 regulated inhibitor of apoptosis 1. (74 aa)
	lrch3	Leucine-rich repeats and calponin homology (CH) domain containing 3. (732 aa)
	rabggtb	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (332 aa)
	LOC102235205	N-myc downstream regulated 1a. (386 aa)
	TP53I3	Tumor protein p53 inducible protein 3. (366 aa)
	LOC102230230	PKS_ER domain-containing protein. (415 aa)
	bnip3	BCL2 interacting protein 3. (191 aa)
	lrch2	Leucine-rich repeats and calponin homology (CH) domain containing 2. (750 aa)
	rabggta	Rab geranylgeranyltransferase subunit alpha. (585 aa)
	casp2	Caspase 2, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (463 aa)
	LOC102223542	Uncharacterized protein. (372 aa)
	prelid1	PRELI domain containing 1a. (210 aa)
	ndrg2	NDRG family member 2. (396 aa)
	LOC102234392	CASP2 and RIPK1 domain containing adaptor with death domain. (211 aa)
	BAX	BCL2 associated X, apoptosis regulator. (190 aa)
	ZADH2	Zinc binding alcohol dehydrogenase domain containing 2. (405 aa)
	LOC102222094	Uncharacterized protein. (337 aa)
	LOC102232286	Apoptosis inducing factor mitochondria associated 4. (459 aa)
	LOC102217975	Apoptosis inducing factor mitochondria associated 5. (516 aa)
	aifm3	Apoptosis inducing factor mitochondria associated 3. (599 aa)
	LOC102236659	TMEM219 domain-containing protein. (273 aa)
	LOC102237960	PRELI domain containing 3. (193 aa)
	LOC102225549	PRELI/MSF1 domain-containing protein. (210 aa)
	pidd1	P53-induced death domain protein 1. (942 aa)
	LOC102236415	BCL2 interacting protein 3 like a. (235 aa)
	LOC102236145	BCL2 interacting protein 3 like b. (226 aa)
	LOC102222476	PRELI domain containing 1b. (207 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bcl2l14	casp2	ENSXMAP00000028692	ENSXMAP00000011615	Uncharacterized protein.	Caspase 2, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.482
LOC102221052	ptar1	ENSXMAP00000029837	ENSXMAP00000018220	CHM Rab escort protein.	Protein prenyltransferase alpha subunit repeat containing 1.	0.953
LOC102221052	rabggta	ENSXMAP00000029837	ENSXMAP00000012693	CHM Rab escort protein.	Rab geranylgeranyltransferase subunit alpha.	0.984
LOC102221052	rabggtb	ENSXMAP00000029837	ENSXMAP00000022130	CHM Rab escort protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.962
LOC102222476	LOC102237960	ENSXMAP00000000638	ENSXMAP00000006080	PRELI domain containing 1b.	PRELI domain containing 3.	0.678
LOC102222476	PRELID3B	ENSXMAP00000000638	ENSXMAP00000019137	PRELI domain containing 1b.	PRELI domain containing 3B.	0.679
LOC102222476	prelid3a	ENSXMAP00000000638	ENSXMAP00000035957	PRELI domain containing 1b.	PRELI domain containing 3A.	0.674
LOC102222476	triap1	ENSXMAP00000000638	ENSXMAP00000019632	PRELI domain containing 1b.	TP53 regulated inhibitor of apoptosis 1.	0.951
LOC102225549	LOC102237960	ENSXMAP00000005480	ENSXMAP00000006080	PRELI/MSF1 domain-containing protein.	PRELI domain containing 3.	0.677
LOC102225549	PRELID3B	ENSXMAP00000005480	ENSXMAP00000019137	PRELI/MSF1 domain-containing protein.	PRELI domain containing 3B.	0.677
LOC102225549	prelid3a	ENSXMAP00000005480	ENSXMAP00000035957	PRELI/MSF1 domain-containing protein.	PRELI domain containing 3A.	0.673
LOC102225549	triap1	ENSXMAP00000005480	ENSXMAP00000019632	PRELI/MSF1 domain-containing protein.	TP53 regulated inhibitor of apoptosis 1.	0.951
LOC102230230	ZADH2	ENSXMAP00000013696	ENSXMAP00000009038	PKS_ER domain-containing protein.	Zinc binding alcohol dehydrogenase domain containing 2.	0.425
LOC102231309	LOC102236145	ENSXMAP00000034195	ENSXMAP00000001823	Zgc:73226.	BCL2 interacting protein 3 like b.	0.648
LOC102231309	LOC102236415	ENSXMAP00000034195	ENSXMAP00000002019	Zgc:73226.	BCL2 interacting protein 3 like a.	0.644
LOC102231309	bnip3	ENSXMAP00000034195	ENSXMAP00000012776	Zgc:73226.	BCL2 interacting protein 3.	0.904
LOC102232876	bcl6	ENSXMAP00000038665	ENSXMAP00000016489	Uncharacterized protein.	BCL6A transcription repressor a.	0.902
LOC102236145	LOC102231309	ENSXMAP00000001823	ENSXMAP00000034195	BCL2 interacting protein 3 like b.	Zgc:73226.	0.648
LOC102236145	LOC102236415	ENSXMAP00000001823	ENSXMAP00000002019	BCL2 interacting protein 3 like b.	BCL2 interacting protein 3 like a.	0.902
LOC102236145	bnip3	ENSXMAP00000001823	ENSXMAP00000012776	BCL2 interacting protein 3 like b.	BCL2 interacting protein 3.	0.729