STRINGSTRING
LOC102232766 LOC102232766 LOC102220370 LOC102220370 thoc7 thoc7 thoc1 thoc1 LOC102223839 LOC102223839 thoc3 thoc3 dhx38 dhx38 cpsf6 cpsf6 WDR33 WDR33 LOC102220647 LOC102220647 fyttd1 fyttd1 rnps1 rnps1 srsf11 srsf11 M3ZTK9_XIPMA M3ZTK9_XIPMA sympk sympk cpsf1 cpsf1 poldip3 poldip3 pabpn1 pabpn1 ddx39a ddx39a pcf11 pcf11 LOC102230749 LOC102230749 CPSF7 CPSF7 cdc40 cdc40 ncmap ncmap WDR25 WDR25 LOC102219527 LOC102219527 lsm11 lsm11 slu7 slu7 sarnp sarnp cstf3 cstf3 clp1 clp1 LOC102220704 LOC102220704 ncbp2 ncbp2 thoc2 thoc2 LOC102236359 LOC102236359 u2af2 u2af2 LOC102217946 LOC102217946 zc3h13 zc3h13 srsf5 srsf5 rbm8a rbm8a upf3b upf3b casc3 casc3 cstf1 cstf1 eif4a3 eif4a3 nudt21 nudt21 LOC102229957 LOC102229957 srsf2 srsf2 cpsf2 cpsf2 LOC102237555 LOC102237555 LOC102220164 LOC102220164 NCBP1 NCBP1 SRSF11 SRSF11 LSM10 LSM10 ENSXMAP00000021626 ENSXMAP00000021626 ENSXMAP00000022396 ENSXMAP00000022396 ENSXMAP00000022713 ENSXMAP00000022713 ENSXMAP00000023504 ENSXMAP00000023504 Srek1 Srek1 SRSF3 SRSF3 thoc5 thoc5 papolg papolg ENSXMAP00000029894 ENSXMAP00000029894 CPSF3 CPSF3 LOC102233713 LOC102233713 LOC102233388 LOC102233388 DDX39A DDX39A LOC102221387 LOC102221387 srrm1 srrm1 znf318 znf318 thoc6 thoc6 PABPN1L PABPN1L ENSXMAP00000037102 ENSXMAP00000037102 LOC102221465 LOC102221465 chtop chtop LOC102234962 LOC102234962 cpsf4 cpsf4 ENSXMAP00000038611 ENSXMAP00000038611 LOC102228051 LOC102228051 cstf2 cstf2 tprg1l tprg1l ENSXMAP00000040543 ENSXMAP00000040543
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102232766U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (487 aa)
LOC102220370Serine and arginine rich splicing factor 9. (245 aa)
thoc7THO complex 7. (203 aa)
thoc1THO complex 1. (654 aa)
LOC102223839Serine and arginine rich splicing factor 7a. (257 aa)
thoc3THO complex 3. (330 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1254 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (586 aa)
WDR33WD repeat domain 33. (892 aa)
LOC102220647Zinc finger CCCH-type containing 11A. (832 aa)
fyttd1Uncharacterized protein. (323 aa)
rnps1RNA binding protein S1, serine-rich domain. (279 aa)
srsf11Serine and arginine rich splicing factor 11. (458 aa)
M3ZTK9_XIPMARRM domain-containing protein. (269 aa)
sympkSymplekin. (1214 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1425 aa)
poldip3Polymerase (DNA-directed), delta interacting protein 3. (495 aa)
pabpn1Poly(A) binding protein, nuclear 1. (294 aa)
ddx39aUncharacterized protein. (427 aa)
pcf11PCF11 cleavage and polyadenylation factor subunit. (1691 aa)
LOC102230749Stem-loop binding protein 2. (338 aa)
CPSF7RRM domain-containing protein. (453 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
ncmapUncharacterized protein. (129 aa)
WDR25WD repeat domain 25. (471 aa)
LOC102219527Uncharacterized protein. (228 aa)
lsm11LSM11, U7 small nuclear RNA associated. (304 aa)
slu7SLU7 homolog, splicing factor. (565 aa)
sarnpSAP domain containing ribonucleoprotein. (211 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
LOC102220704Cleavage and polyadenylation specific factor 3. (686 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
thoc2THO complex 2. (1490 aa)
LOC102236359Serine and arginine rich splicing factor 1a. (245 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
LOC102217946Aly/REF export factor. (272 aa)
zc3h13Zinc finger CCCH-type containing 13. (1781 aa)
srsf5Serine and arginine rich splicing factor 5a. (316 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (453 aa)
casc3Casc3 exon junction complex subunit. (767 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)
LOC102229957RRM domain-containing protein. (160 aa)
srsf2Serine and arginine rich splicing factor 2a. (234 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
LOC102237555FIP1 like 1b (S. cerevisiae). (550 aa)
LOC102220164RRM domain-containing protein. (242 aa)
NCBP1Nuclear cap binding protein subunit 1. (796 aa)
SRSF11Serine and arginine rich splicing factor 11. (453 aa)
LSM10LSM10, U7 small nuclear RNA associated. (125 aa)
ENSXMAP00000021626Uncharacterized protein. (195 aa)
ENSXMAP00000022396Uncharacterized protein. (112 aa)
ENSXMAP00000022713Small nuclear ribonucleoprotein-associated protein. (234 aa)
ENSXMAP00000023504RRM domain-containing protein. (105 aa)
Srek1RRM domain-containing protein. (122 aa)
SRSF3Serine and arginine rich splicing factor 3b. (165 aa)
thoc5THO complex 5. (683 aa)
papolgPoly(A) polymerase gamma. (678 aa)
ENSXMAP00000029894Uncharacterized protein. (152 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (737 aa)
LOC102233713Mago homolog, exon junction complex subunit. (149 aa)
LOC102233388U2 small nuclear RNA auxiliary factor 1. (241 aa)
DDX39ADExD-box helicase 39A. (427 aa)
LOC102221387Tumor protein p63 regulated 1. (217 aa)
srrm1Serine/arginine repetitive matrix 1. (862 aa)
znf318Uncharacterized protein. (1862 aa)
thoc6THO complex 6. (354 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (222 aa)
ENSXMAP00000037102Uncharacterized protein. (189 aa)
LOC102221465Serine and arginine rich splicing factor 6a. (331 aa)
chtopChromatin target of PRMT1a. (196 aa)
LOC102234962Serine and arginine rich splicing factor 5b. (302 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (264 aa)
ENSXMAP00000038611Uncharacterized protein. (92 aa)
LOC102228051Uncharacterized protein. (354 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (549 aa)
tprg1lTumor protein p63 regulated 1-like. (332 aa)
ENSXMAP00000040543RRM domain-containing protein. (119 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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