STRINGSTRING
pold3 pold3 rfc3 rfc3 ENSXMAP00000039893 ENSXMAP00000039893 pole3 pole3 ung ung rpa1 rpa1 apex1 apex1 LOC102230232 LOC102230232 mbd4 mbd4 xrcc1 xrcc1 rpa3 rpa3 lig3 lig3 rfc4 rfc4 rfc2 rfc2 adprhl2 adprhl2 parp3 parp3 apex2 apex2 smug1 smug1 LOC111609482 LOC111609482 ogg1 ogg1 neil1 neil1 pold2 pold2 LOC102232783 LOC102232783 pcna pcna LOC102219446 LOC102219446 polb polb rpa2 rpa2 LOC102218031 LOC102218031 LOC102230076 LOC102230076 pold4 pold4 MUTYH MUTYH nthl1 nthl1 LOC102223318 LOC102223318 tdg tdg meiob meiob pold1 pold1 RCBTB1 RCBTB1 RPA1 RPA1 rfc1 rfc1 pole2 pole2 pole pole rcbtb2 rcbtb2 fen1 fen1 lig1 lig1 parp2 parp2 LOC102220076 LOC102220076 parp1 parp1 pole4 pole4 LOC102227006 LOC102227006 pnkp pnkp rfc5 rfc5 mpg mpg
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (438 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
ENSXMAP00000039893Si:ch1073-75f15.2. (113 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (150 aa)
ungUracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (303 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
apex1DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (326 aa)
LOC102230232RPA_C domain-containing protein. (247 aa)
mbd4Methyl-CpG binding domain protein 4. (451 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (640 aa)
rpa3Replication protein A3. (122 aa)
lig3DNA ligase. (998 aa)
rfc4Replication factor C (activator 1) 4. (357 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
adprhl2ADP-ribosylhydrolase like 2. (383 aa)
parp3Poly [ADP-ribose] polymerase. (539 aa)
apex2DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (560 aa)
smug1Single-strand-selective monofunctional uracil-DNA glycosylase 1. (273 aa)
LOC111609482Poly (ADP-ribose) glycohydrolase, like. (738 aa)
ogg18-oxoguanine DNA glycosylase. (388 aa)
neil1Nei-like DNA glycosylase 1. (415 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (528 aa)
LOC102232783Von Willebrand factor A domain containing 5B2. (1390 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
LOC102219446Uncharacterized protein. (727 aa)
polbDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (337 aa)
rpa2Replication protein A2. (278 aa)
LOC102218031ATPase family AAA domain containing 5a. (1810 aa)
LOC102230076Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
pold4Si:dkey-28b4.7. (108 aa)
MUTYHAdenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (534 aa)
nthl1Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. (320 aa)
LOC102223318Thymine DNA glycosylase, tandem duplicate 2. (411 aa)
tdgThymine DNA glycosylase, tandem duplicate 1. (492 aa)
meiobMethionine sulfoxide reductase B1b. (425 aa)
pold1DNA polymerase. (1105 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (700 aa)
rfc1Replication factor C subunit 1. (1195 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2281 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
lig1DNA ligase. (595 aa)
parp2Poly [ADP-ribose] polymerase. (509 aa)
LOC102220076Zgc:110269. (347 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1015 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
LOC102227006Poly (ADP-ribose) glycohydrolase a. (756 aa)
pnkpPolynucleotide kinase 3'-phosphatase. (590 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
mpgN-methylpurine DNA glycosylase. (294 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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