(15 nodes) Assembly and cell surface presentation of NMDA receptors network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102220283	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a. (1973 aa)
	grin2a	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a. (1543 aa)
	GRIN3A	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1245 aa)
	grin2b	Uncharacterized protein. (1709 aa)
	LOC102233216	Neurobeachin b. (2877 aa)
	LOC102217953	Neurobeachin a. (2461 aa)
	LOC102219807	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b. (1957 aa)
	LOC102238048	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca. (1411 aa)
	lrba	LPS-responsive vesicle trafficking, beach and anchor containing. (2895 aa)
	LOC102237581	Uncharacterized protein. (1379 aa)
	ENSXMAP00000022406	Uncharacterized protein. (85 aa)
	LOC102232517	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b. (904 aa)
	ENSXMAP00000030467	ANF_receptor domain-containing protein. (326 aa)
	LOC102220646	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a. (964 aa)
	LOC102226347	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b. (1594 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000030467	GRIN3A	ENSXMAP00000030467	ENSXMAP00000002241	ANF_receptor domain-containing protein.	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.582
ENSXMAP00000030467	LOC102220646	ENSXMAP00000030467	ENSXMAP00000033412	ANF_receptor domain-containing protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.802
ENSXMAP00000030467	LOC102232517	ENSXMAP00000030467	ENSXMAP00000025115	ANF_receptor domain-containing protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	0.802
GRIN3A	ENSXMAP00000030467	ENSXMAP00000002241	ENSXMAP00000030467	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	ANF_receptor domain-containing protein.	0.582
GRIN3A	LOC102219807	ENSXMAP00000002241	ENSXMAP00000012039	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b.	0.582
GRIN3A	LOC102220283	ENSXMAP00000002241	ENSXMAP00000014174	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a.	0.582
GRIN3A	LOC102220646	ENSXMAP00000002241	ENSXMAP00000033412	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.911
GRIN3A	LOC102226347	ENSXMAP00000002241	ENSXMAP00000037356	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.	0.582
GRIN3A	LOC102232517	ENSXMAP00000002241	ENSXMAP00000025115	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	0.911
GRIN3A	LOC102237581	ENSXMAP00000002241	ENSXMAP00000017187	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.582
GRIN3A	LOC102238048	ENSXMAP00000002241	ENSXMAP00000012995	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.	0.582
GRIN3A	grin2a	ENSXMAP00000002241	ENSXMAP00000000229	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	0.582
GRIN3A	grin2b	ENSXMAP00000002241	ENSXMAP00000006242	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.584
LOC102219807	GRIN3A	ENSXMAP00000012039	ENSXMAP00000002241	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b.	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.582
LOC102219807	LOC102220646	ENSXMAP00000012039	ENSXMAP00000033412	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.802
LOC102219807	LOC102232517	ENSXMAP00000012039	ENSXMAP00000025115	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	0.802
LOC102220283	GRIN3A	ENSXMAP00000014174	ENSXMAP00000002241	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a.	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.582
LOC102220283	LOC102220646	ENSXMAP00000014174	ENSXMAP00000033412	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.802
LOC102220283	LOC102232517	ENSXMAP00000014174	ENSXMAP00000025115	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	0.802
LOC102220646	ENSXMAP00000030467	ENSXMAP00000033412	ENSXMAP00000030467	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	ANF_receptor domain-containing protein.	0.802