(11 nodes) Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases network (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pomt2	Protein-O-mannosyltransferase 2. (755 aa)
	sdf2	Stromal cell-derived factor 2. (226 aa)
	itpr3	Inositol 1,4,5-trisphosphate receptor, type 3. (2431 aa)
	itpr1	Inositol 1,4,5-trisphosphate receptor, type 1b. (2671 aa)
	pomt1	Protein-O-mannosyltransferase 1. (719 aa)
	LOC102218820	Ryanodine receptor 1b (skeletal). (3818 aa)
	sdf2l1	Stromal cell-derived factor 2-like 1. (258 aa)
	LOC102238415	Ryanodine receptor 2b (cardiac). (4600 aa)
	LOC102217419	Inositol 1,4,5-trisphosphate receptor, type 1a. (2694 aa)
	itpr2	Inositol 1,4,5-trisphosphate receptor, type 2. (2636 aa)
	RYR2	Uncharacterized protein. (4870 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102217419	itpr1	ENSXMAP00000002284	ENSXMAP00000008148	Inositol 1,4,5-trisphosphate receptor, type 1a.	Inositol 1,4,5-trisphosphate receptor, type 1b.	0.900
LOC102217419	itpr2	ENSXMAP00000002284	ENSXMAP00000001323	Inositol 1,4,5-trisphosphate receptor, type 1a.	Inositol 1,4,5-trisphosphate receptor, type 2.	0.905
itpr1	LOC102217419	ENSXMAP00000008148	ENSXMAP00000002284	Inositol 1,4,5-trisphosphate receptor, type 1b.	Inositol 1,4,5-trisphosphate receptor, type 1a.	0.900
itpr1	itpr2	ENSXMAP00000008148	ENSXMAP00000001323	Inositol 1,4,5-trisphosphate receptor, type 1b.	Inositol 1,4,5-trisphosphate receptor, type 2.	0.905
itpr2	LOC102217419	ENSXMAP00000001323	ENSXMAP00000002284	Inositol 1,4,5-trisphosphate receptor, type 2.	Inositol 1,4,5-trisphosphate receptor, type 1a.	0.905
itpr2	itpr1	ENSXMAP00000001323	ENSXMAP00000008148	Inositol 1,4,5-trisphosphate receptor, type 2.	Inositol 1,4,5-trisphosphate receptor, type 1b.	0.905
pomt1	pomt2	ENSXMAP00000006749	ENSXMAP00000014563	Protein-O-mannosyltransferase 1.	Protein-O-mannosyltransferase 2.	0.996
pomt2	pomt1	ENSXMAP00000014563	ENSXMAP00000006749	Protein-O-mannosyltransferase 2.	Protein-O-mannosyltransferase 1.	0.996