12 items (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	e2f4	E2F transcription factor 4. (389 aa)
	ENSXMAP00000036268	E2F_TDP domain-containing protein. (87 aa)
	e2f3	E2F transcription factor 3. (446 aa)
	ENSXMAP00000041178	E2F transcription factor 5. (149 aa)
	e2f2	Si:ch211-160f23.5. (472 aa)
	tfdp1	Transcription factor. (410 aa)
	e2f8	E2F transcription factor 8. (855 aa)
	LOC106699913	THAP-type domain-containing protein. (383 aa)
	e2f7	E2F transcription factor 7. (794 aa)
	e2f1	E2F transcription factor 1. (456 aa)
	LOC102233551	THAP-type domain-containing protein. (374 aa)
	ENSXMAP00000036885	E2F_TDP domain-containing protein. (102 aa)

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000036268	ENSXMAP00000036885	ENSXMAP00000036268	ENSXMAP00000036885	E2F_TDP domain-containing protein.	E2F_TDP domain-containing protein.	0.531
ENSXMAP00000036268	tfdp1	ENSXMAP00000036268	ENSXMAP00000011702	E2F_TDP domain-containing protein.	Transcription factor.	0.841
ENSXMAP00000036885	ENSXMAP00000036268	ENSXMAP00000036885	ENSXMAP00000036268	E2F_TDP domain-containing protein.	E2F_TDP domain-containing protein.	0.531
ENSXMAP00000036885	ENSXMAP00000041178	ENSXMAP00000036885	ENSXMAP00000041178	E2F_TDP domain-containing protein.	E2F transcription factor 5.	0.604
ENSXMAP00000036885	e2f1	ENSXMAP00000036885	ENSXMAP00000004680	E2F_TDP domain-containing protein.	E2F transcription factor 1.	0.623
ENSXMAP00000036885	e2f4	ENSXMAP00000036885	ENSXMAP00000001972	E2F_TDP domain-containing protein.	E2F transcription factor 4.	0.587
ENSXMAP00000036885	tfdp1	ENSXMAP00000036885	ENSXMAP00000011702	E2F_TDP domain-containing protein.	Transcription factor.	0.976
ENSXMAP00000041178	ENSXMAP00000036885	ENSXMAP00000041178	ENSXMAP00000036885	E2F transcription factor 5.	E2F_TDP domain-containing protein.	0.604
ENSXMAP00000041178	e2f1	ENSXMAP00000041178	ENSXMAP00000004680	E2F transcription factor 5.	E2F transcription factor 1.	0.454
ENSXMAP00000041178	e2f2	ENSXMAP00000041178	ENSXMAP00000012593	E2F transcription factor 5.	Si:ch211-160f23.5.	0.586
ENSXMAP00000041178	e2f3	ENSXMAP00000041178	ENSXMAP00000028975	E2F transcription factor 5.	E2F transcription factor 3.	0.574
ENSXMAP00000041178	e2f4	ENSXMAP00000041178	ENSXMAP00000001972	E2F transcription factor 5.	E2F transcription factor 4.	0.902
ENSXMAP00000041178	tfdp1	ENSXMAP00000041178	ENSXMAP00000011702	E2F transcription factor 5.	Transcription factor.	0.985
LOC102233551	tfdp1	ENSXMAP00000002377	ENSXMAP00000011702	THAP-type domain-containing protein.	Transcription factor.	0.930
LOC106699913	tfdp1	ENSXMAP00000009998	ENSXMAP00000011702	THAP-type domain-containing protein.	Transcription factor.	0.797
e2f1	ENSXMAP00000036885	ENSXMAP00000004680	ENSXMAP00000036885	E2F transcription factor 1.	E2F_TDP domain-containing protein.	0.623
e2f1	ENSXMAP00000041178	ENSXMAP00000004680	ENSXMAP00000041178	E2F transcription factor 1.	E2F transcription factor 5.	0.454
e2f1	e2f2	ENSXMAP00000004680	ENSXMAP00000012593	E2F transcription factor 1.	Si:ch211-160f23.5.	0.656
e2f1	e2f3	ENSXMAP00000004680	ENSXMAP00000028975	E2F transcription factor 1.	E2F transcription factor 3.	0.619
e2f1	e2f4	ENSXMAP00000004680	ENSXMAP00000001972	E2F transcription factor 1.	E2F transcription factor 4.	0.459