STRINGSTRING
LOC102223696 LOC102223696 LOC102237119 LOC102237119 LOC102235710 LOC102235710 PPP2R3B PPP2R3B LOC102236397 LOC102236397 UPF1 UPF1 nxf1 nxf1 LOC102234596 LOC102234596 ppp2r1b ppp2r1b WDR33 WDR33 hbs1l hbs1l rnps1 rnps1 etf1 etf1 sympk sympk pabpn1 pabpn1 pcf11 pcf11 smg7 smg7 CPSF7 CPSF7 ppp2r5c ppp2r5c ppp2ca ppp2ca ppp2r5b ppp2r5b ppp2r3c ppp2r3c LOC102223777 LOC102223777 pnn pnn cstf3 cstf3 LOC102232527 LOC102232527 clp1 clp1 LOC102220704 LOC102220704 ncbp2 ncbp2 smg1 smg1 smg6 smg6 fus fus tardbp tardbp LOC102219385 LOC102219385 pym1 pym1 LOC102217946 LOC102217946 LOC102237020 LOC102237020 ppp2r2d ppp2r2d LOC102218128 LOC102218128 rbm8a rbm8a smg5 smg5 upf3b upf3b casc3 casc3 cstf1 cstf1 eif4a3 eif4a3 nudt21 nudt21 ssu72 ssu72 wdr82 wdr82 rngtt rngtt cpsf2 cpsf2 UPF2 UPF2 ppp2r5a ppp2r5a LOC102237555 LOC102237555 LOC102220164 LOC102220164 LOC102220933 LOC102220933 NCBP1 NCBP1 pelo pelo LOC102229321 LOC102229321 pabpc4 pabpc4 LOC102220954 LOC102220954 LOC102229527 LOC102229527 nxt2 nxt2 LOC102220839 LOC102220839 ppp2r5e ppp2r5e gspt1 gspt1 LOC102225349 LOC102225349 LOC102225941 LOC102225941 ppp2r3a ppp2r3a rnmt rnmt msi2 msi2 LOC102217180 LOC102217180 papolg papolg PPP2R2C PPP2R2C LOC102233529 LOC102233529 LOC102217545 LOC102217545 ppp2cb ppp2cb msi1 msi1 LOC102233713 LOC102233713 LOC102220505 LOC102220505 pabpc1 pabpc1 PABPN1L PABPN1L ppp1cc ppp1cc sap18 sap18 cpsf4 cpsf4 cstf2 cstf2 LOC102230133 LOC102230133 Ppp2r5d Ppp2r5d LOC102223222-2 LOC102223222-2
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102223696Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)
LOC102237119Apoptotic chromatin condensation inducer 1b. (1219 aa)
LOC102235710Uncharacterized protein. (1084 aa)
PPP2R3BEF-hand domain-containing protein. (579 aa)
LOC102236397Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (445 aa)
UPF1UPF1 RNA helicase and ATPase. (1098 aa)
nxf1Zgc:153681. (631 aa)
LOC102234596Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (634 aa)
ppp2r1bProtein phosphatase 2, regulatory subunit A, beta b. (589 aa)
WDR33WD repeat domain 33. (892 aa)
hbs1lHBS1-like translational GTPase. (702 aa)
rnps1RNA binding protein S1, serine-rich domain. (279 aa)
etf1Eukaryotic translation termination factor 1b. (443 aa)
sympkSymplekin. (1214 aa)
pabpn1Poly(A) binding protein, nuclear 1. (294 aa)
pcf11PCF11 cleavage and polyadenylation factor subunit. (1691 aa)
smg7SMG7 nonsense mediated mRNA decay factor. (1135 aa)
CPSF7RRM domain-containing protein. (453 aa)
ppp2r5cSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (525 aa)
ppp2caSerine/threonine-protein phosphatase. (309 aa)
ppp2r5bSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (522 aa)
ppp2r3cProtein phosphatase 2, regulatory subunit B'', gamma. (457 aa)
LOC102223777Serine/threonine-protein phosphatase. (309 aa)
pnnPinin, desmosome associated protein. (650 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
LOC102232527Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (328 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
LOC102220704Cleavage and polyadenylation specific factor 3. (686 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3624 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1618 aa)
fusTAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (473 aa)
tardbpTAR DNA binding protein, like. (298 aa)
LOC102219385Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
pym1PYM homolog 1, exon junction complex associated factor. (213 aa)
LOC102217946Aly/REF export factor. (272 aa)
LOC102237020Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (453 aa)
ppp2r2dSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (447 aa)
LOC102218128UPF3A regulator of nonsense mediated mRNA decay. (464 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1113 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (453 aa)
casc3Casc3 exon junction complex subunit. (767 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)
wdr82WD repeat domain 82. (313 aa)
rngttPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (603 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1307 aa)
ppp2r5aSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (515 aa)
LOC102237555FIP1 like 1b (S. cerevisiae). (550 aa)
LOC102220164RRM domain-containing protein. (242 aa)
LOC102220933Uncharacterized protein. (348 aa)
NCBP1Nuclear cap binding protein subunit 1. (796 aa)
peloProtein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (385 aa)
LOC102229321DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (488 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (626 aa)
LOC102220954Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (455 aa)
LOC102229527Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (325 aa)
nxt2Nuclear transport factor 2-like export factor 2. (143 aa)
LOC102220839G1 to S phase transition 1, like. (578 aa)
ppp2r5eSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (478 aa)
gspt1G1 to S phase transition 1. (586 aa)
LOC102225349Zgc:193690. (487 aa)
LOC102225941Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (446 aa)
ppp2r3aProtein phosphatase 2, regulatory subunit B'', alpha. (1402 aa)
rnmtmRNA cap guanine-N7 methyltransferase. (379 aa)
msi2Musashi RNA-binding protein 2a. (407 aa)
LOC102217180Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (579 aa)
papolgPoly(A) polymerase gamma. (678 aa)
PPP2R2CSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (452 aa)
LOC102233529Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (335 aa)
LOC102217545SAP domain-containing protein. (1096 aa)
ppp2cbSerine/threonine-protein phosphatase. (309 aa)
msi1Musashi RNA binding protein 1. (421 aa)
LOC102233713Mago homolog, exon junction complex subunit. (149 aa)
LOC102220505TAR DNA binding protein. (402 aa)
pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (222 aa)
ppp1ccSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (333 aa)
sap18Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (153 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (264 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (549 aa)
LOC102230133Poly(A) binding protein, cytoplasmic 1-like. (651 aa)
Ppp2r5dUncharacterized protein. (196 aa)
LOC102223222-2WD_REPEATS_REGION domain-containing protein. (345 aa)
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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