(15 nodes) Protein transport across the cell outer membrane, and Pilus assembly network (Aliivibrio wodanis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CED56686.1	Putative secretion protein. (170 aa)
	CED71386.1	Putative uncharacterized protein. (163 aa)
	mshP-3	Putative exported protein MshP. (145 aa)
	mshO-3	Putative exported protein MshO. (241 aa)
	mshD-3	Type IV pilus, MSHA pilin protein MshD. (197 aa)
	mshC-3	Type IV pilus, MSHA pilin protein MshC. (196 aa)
	mshA	Type IV pilus, MSHA pilin protein MshA. (153 aa)
	mshB	Type IV pilus, MSHA pilin protein MshB. (187 aa)
	mshG	Type IV pilus, MSHA biogenesis protein MshG. (408 aa)
	mshN	Type IV pilus, MSHA biogenesis protein MshN. (370 aa)
	mshM	Type IV pilus, MSHA biogenesis protein MshM. (282 aa)
	mshD-4	Type IV pilus, MSHA biogenesis protein MshD. (550 aa)
	mshK	Type IV pilus, MSHA biogenesis protein MshK. (110 aa)
	mshJ	Type IV pilus, MSHA biogenesis protein MshJ. (212 aa)
	mshI	Type IV pilus, MSHA biogenesis protein MshI. (485 aa)

Your Current Organism:

Aliivibrio wodanis

NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CED56686.1	mshD-3	AWOD_II_0027	AWOD_I_2316	Putative secretion protein.	Type IV pilus, MSHA pilin protein MshD.	0.754
CED56686.1	mshD-4	AWOD_II_0027	AWOD_I_2325	Putative secretion protein.	Type IV pilus, MSHA biogenesis protein MshD.	0.793
CED56686.1	mshG	AWOD_II_0027	AWOD_I_2321	Putative secretion protein.	Type IV pilus, MSHA biogenesis protein MshG.	0.620
CED56686.1	mshI	AWOD_II_0027	AWOD_I_2328	Putative secretion protein.	Type IV pilus, MSHA biogenesis protein MshI.	0.719
CED56686.1	mshJ	AWOD_II_0027	AWOD_I_2327	Putative secretion protein.	Type IV pilus, MSHA biogenesis protein MshJ.	0.790
CED56686.1	mshM	AWOD_II_0027	AWOD_I_2324	Putative secretion protein.	Type IV pilus, MSHA biogenesis protein MshM.	0.521
CED56686.1	mshN	AWOD_II_0027	AWOD_I_2323	Putative secretion protein.	Type IV pilus, MSHA biogenesis protein MshN.	0.724
CED56686.1	mshO-3	AWOD_II_0027	AWOD_I_2315	Putative secretion protein.	Putative exported protein MshO.	0.789
CED56686.1	mshP-3	AWOD_II_0027	AWOD_I_2314	Putative secretion protein.	Putative exported protein MshP.	0.629
CED71386.1	mshB	AWOD_I_1306	AWOD_I_2319	Putative uncharacterized protein.	Type IV pilus, MSHA pilin protein MshB.	0.783
CED71386.1	mshD-3	AWOD_I_1306	AWOD_I_2316	Putative uncharacterized protein.	Type IV pilus, MSHA pilin protein MshD.	0.724
CED71386.1	mshD-4	AWOD_I_1306	AWOD_I_2325	Putative uncharacterized protein.	Type IV pilus, MSHA biogenesis protein MshD.	0.786
CED71386.1	mshG	AWOD_I_1306	AWOD_I_2321	Putative uncharacterized protein.	Type IV pilus, MSHA biogenesis protein MshG.	0.629
CED71386.1	mshI	AWOD_I_1306	AWOD_I_2328	Putative uncharacterized protein.	Type IV pilus, MSHA biogenesis protein MshI.	0.692
CED71386.1	mshJ	AWOD_I_1306	AWOD_I_2327	Putative uncharacterized protein.	Type IV pilus, MSHA biogenesis protein MshJ.	0.787
CED71386.1	mshM	AWOD_I_1306	AWOD_I_2324	Putative uncharacterized protein.	Type IV pilus, MSHA biogenesis protein MshM.	0.405
CED71386.1	mshN	AWOD_I_1306	AWOD_I_2323	Putative uncharacterized protein.	Type IV pilus, MSHA biogenesis protein MshN.	0.746
CED71386.1	mshO-3	AWOD_I_1306	AWOD_I_2315	Putative uncharacterized protein.	Putative exported protein MshO.	0.782
CED71386.1	mshP-3	AWOD_I_1306	AWOD_I_2314	Putative uncharacterized protein.	Putative exported protein MshP.	0.660
mshA	mshB	AWOD_I_2318	AWOD_I_2319	Type IV pilus, MSHA pilin protein MshA.	Type IV pilus, MSHA pilin protein MshB.	0.629

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