58 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101156149	Uncharacterized protein. (201 aa)
	LOC101169945	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (330 aa)
	map2k5	Mitogen-activated protein kinase kinase 5; Belongs to the protein kinase superfamily. (445 aa)
	spred3	Sprouty related EVH1 domain containing 3. (287 aa)
	SPRED2	Sprouty related EVH1 domain containing 2. (464 aa)
	rasgrf2	Ras protein-specific guanine nucleotide-releasing factor 2b. (1269 aa)
	rasa3	RAS p21 protein activator 3. (833 aa)
	map2k2	Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily. (397 aa)
	LOC101163063	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b. (1438 aa)
	LOC101167529	RAP1A, member of RAS oncogene family b. (185 aa)
	RAP2B	RAP2B, member of RAS oncogene family. (186 aa)
	map2k1	Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily. (394 aa)
	LOC101167472	Connector enhancer of kinase suppressor of Ras 2b. (956 aa)
	rasa1	RAS p21 protein activator (GTPase activating protein) 1a. (1055 aa)
	LOC101167287	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide b; Belongs to the 14-3-3 family. (244 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	raf1	Raf-1 proto-oncogene, serine/threonine kinase a. (677 aa)
	LOC101171042	DIRAS family, GTP-binding RAS-like 1b. (198 aa)
	apbb1ip	Amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein. (662 aa)
	RASAL1	RAS protein activator like 1. (759 aa)
	H2MJT0_ORYLA	Uncharacterized protein. (589 aa)
	shoc2	SHOC2 leucine rich repeat scaffold protein. (582 aa)
	rgl1	Ral guanine nucleotide dissociation stimulator-like 1. (772 aa)
	araf	A-Raf proto-oncogene, serine/threonine kinase. (607 aa)
	LOC101157335	Uncharacterized protein. (1009 aa)
	H2MST1_ORYLA	Rap guanine nucleotide exchange factor (GEF) 4. (421 aa)
	LOC101172864	Uncharacterized protein. (255 aa)
	mras	Muscle RAS oncogene homolog. (209 aa)
	ralgds	Ral guanine nucleotide dissociation stimulator. (774 aa)
	Nf1	Uncharacterized protein. (506 aa)
	rap2c	RAP2C, member of RAS oncogene family. (183 aa)
	rap1gap2	RAP1 GTPase activating protein 2a. (752 aa)
	spred1	Sprouty related EVH1 domain containing 1. (542 aa)
	rapgef2	Rap guanine nucleotide exchange factor (GEF) 2. (1630 aa)
	LOC101157651	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (1127 aa)
	LOC101154954	Zgc:55558. (189 aa)
	ENSORLP00000030068	Uncharacterized protein. (150 aa)
	LOC101157118	V-ral simian leukemia viral oncogene homolog Ba (ras related). (207 aa)
	ENSORLP00000030507	Rap guanine nucleotide exchange factor (GEF) 4. (348 aa)
	lrrc7	Leucine rich repeat containing 7. (1624 aa)
	kras	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity (By similarity). Plays an important role in the regulation of cell proliferation. (189 aa)
	LOC101174431	RAS related. (196 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (875 aa)
	braf	B-Raf proto-oncogene, serine/threonine kinase. (823 aa)
	rras2	RAS related 2. (202 aa)
	ksr2	Kinase suppressor of ras 2. (960 aa)
	LOC101158694	Uncharacterized protein. (1258 aa)
	ENSORLP00000037708	annotation not available (611 aa)
	RAP2A	Uncharacterized protein. (183 aa)
	LOC105358735	Sprouty related EVH1 domain containing 2a. (430 aa)
	ENSORLP00000039360	N-terminal Ras-GEF domain-containing protein. (564 aa)
	LOC101163992	RAP1 GTPase activating protein 2b. (687 aa)
	LOC101167252	V-ral simian leukemia viral oncogene homolog Aa (ras related). (206 aa)
	rapgef6	Rap guanine nucleotide exchange factor (GEF) 6. (1715 aa)
	RASGRF1	Ras protein specific guanine nucleotide releasing factor 1. (1252 aa)
	LOC101171247	RAP1A, member of RAS oncogene family a. (202 aa)
	LOC101164795	Uncharacterized protein. (199 aa)
	ksr1	Kinase suppressor of ras 1a. (978 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ENSORLP00000030068	ENSORLP00000034821	ENSORLP00000030068	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.406
CSDE1	ENSORLP00000030507	ENSORLP00000034821	ENSORLP00000030507	Cold shock domain containing E1, RNA-binding.	Rap guanine nucleotide exchange factor (GEF) 4.	0.457
CSDE1	ENSORLP00000039360	ENSORLP00000034821	ENSORLP00000039360	Cold shock domain containing E1, RNA-binding.	N-terminal Ras-GEF domain-containing protein.	0.490
CSDE1	H2MJT0_ORYLA	ENSORLP00000034821	ENSORLP00000018929	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.743
CSDE1	H2MST1_ORYLA	ENSORLP00000034821	ENSORLP00000021824	Cold shock domain containing E1, RNA-binding.	Rap guanine nucleotide exchange factor (GEF) 4.	0.457
CSDE1	LOC101157335	ENSORLP00000034821	ENSORLP00000021736	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.461
CSDE1	LOC101157651	ENSORLP00000034821	ENSORLP00000029100	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.459
CSDE1	LOC101158694	ENSORLP00000034821	ENSORLP00000036125	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.438
CSDE1	LOC101163063	ENSORLP00000034821	ENSORLP00000006622	Cold shock domain containing E1, RNA-binding.	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.	0.515
CSDE1	LOC101163992	ENSORLP00000034821	ENSORLP00000040725	Cold shock domain containing E1, RNA-binding.	RAP1 GTPase activating protein 2b.	0.435
CSDE1	LOC101167472	ENSORLP00000034821	ENSORLP00000010280	Cold shock domain containing E1, RNA-binding.	Connector enhancer of kinase suppressor of Ras 2b.	0.461
CSDE1	LOC105358735	ENSORLP00000034821	ENSORLP00000038410	Cold shock domain containing E1, RNA-binding.	Sprouty related EVH1 domain containing 2a.	0.552
CSDE1	Nf1	ENSORLP00000034821	ENSORLP00000026133	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.743
CSDE1	RASAL1	ENSORLP00000034821	ENSORLP00000016456	Cold shock domain containing E1, RNA-binding.	RAS protein activator like 1.	0.512
CSDE1	RASGRF1	ENSORLP00000034821	ENSORLP00000041908	Cold shock domain containing E1, RNA-binding.	Ras protein specific guanine nucleotide releasing factor 1.	0.438
CSDE1	SPRED2	ENSORLP00000034821	ENSORLP00000003022	Cold shock domain containing E1, RNA-binding.	Sprouty related EVH1 domain containing 2.	0.552
CSDE1	apbb1ip	ENSORLP00000034821	ENSORLP00000016235	Cold shock domain containing E1, RNA-binding.	Amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein.	0.472
CSDE1	araf	ENSORLP00000034821	ENSORLP00000020929	Cold shock domain containing E1, RNA-binding.	A-Raf proto-oncogene, serine/threonine kinase.	0.775
CSDE1	braf	ENSORLP00000034821	ENSORLP00000035095	Cold shock domain containing E1, RNA-binding.	B-Raf proto-oncogene, serine/threonine kinase.	0.775
CSDE1	ksr1	ENSORLP00000034821	ENSORLP00000045143	Cold shock domain containing E1, RNA-binding.	Kinase suppressor of ras 1a.	0.620