(5 nodes) Ragulator complex network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lamtor5	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5. (91 aa)
	slc38a9	Solute carrier family 38 member 9. (551 aa)
	lamtor3	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3. (132 aa)
	lamtor4	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4. (101 aa)
	lamtor1	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1. (160 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lamtor1	lamtor3	ENSORLP00000042166	ENSORLP00000022638	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
lamtor1	lamtor4	ENSORLP00000042166	ENSORLP00000024027	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.999
lamtor1	lamtor5	ENSORLP00000042166	ENSORLP00000007862	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
lamtor1	slc38a9	ENSORLP00000042166	ENSORLP00000019343	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Solute carrier family 38 member 9.	0.999
lamtor3	lamtor1	ENSORLP00000022638	ENSORLP00000042166	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.999
lamtor3	lamtor4	ENSORLP00000022638	ENSORLP00000024027	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.999
lamtor3	lamtor5	ENSORLP00000022638	ENSORLP00000007862	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
lamtor3	slc38a9	ENSORLP00000022638	ENSORLP00000019343	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	Solute carrier family 38 member 9.	0.999
lamtor4	lamtor1	ENSORLP00000024027	ENSORLP00000042166	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.999
lamtor4	lamtor3	ENSORLP00000024027	ENSORLP00000022638	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
lamtor4	lamtor5	ENSORLP00000024027	ENSORLP00000007862	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
lamtor4	slc38a9	ENSORLP00000024027	ENSORLP00000019343	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	Solute carrier family 38 member 9.	0.998
lamtor5	lamtor1	ENSORLP00000007862	ENSORLP00000042166	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.999
lamtor5	lamtor3	ENSORLP00000007862	ENSORLP00000022638	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
lamtor5	lamtor4	ENSORLP00000007862	ENSORLP00000024027	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.999
lamtor5	slc38a9	ENSORLP00000007862	ENSORLP00000019343	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	Solute carrier family 38 member 9.	0.999
slc38a9	lamtor1	ENSORLP00000019343	ENSORLP00000042166	Solute carrier family 38 member 9.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.999
slc38a9	lamtor3	ENSORLP00000019343	ENSORLP00000022638	Solute carrier family 38 member 9.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
slc38a9	lamtor4	ENSORLP00000019343	ENSORLP00000024027	Solute carrier family 38 member 9.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.998
slc38a9	lamtor5	ENSORLP00000019343	ENSORLP00000007862	Solute carrier family 38 member 9.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999