STRINGSTRING
LOC101167527 LOC101167527 Pop7 Pop7 LOC101158762 LOC101158762 tsen15 tsen15 rpp38 rpp38 H2MDZ5_ORYLA H2MDZ5_ORYLA pop5 pop5 H2MR55_ORYLA H2MR55_ORYLA pop4 pop4 rpp30 rpp30 rpp40 rpp40 tsen2 tsen2 tsen54 tsen54 ENSORLP00000030293 ENSORLP00000030293 pop1 pop1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101167527Ribonuclease P 21 subunit. (146 aa)
Pop7Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences. (139 aa)
LOC101158762Alba domain-containing protein. (187 aa)
tsen15TSEN15 tRNA splicing endonuclease subunit. (167 aa)
rpp38Ribonuclease P/MRP 38 subunit. (275 aa)
H2MDZ5_ORYLARibonuclease P and MRP subunit p25, b. (217 aa)
pop5Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (166 aa)
H2MR55_ORYLARibonuclease P/MRP 25 subunit-like. (184 aa)
pop4Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (221 aa)
rpp30Ribonuclease P/MRP 30 subunit. (289 aa)
rpp40Uncharacterized protein. (379 aa)
tsen2tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...] (401 aa)
tsen54TSEN54 tRNA splicing endonuclease subunit. (493 aa)
ENSORLP00000030293Uncharacterized protein. (753 aa)
pop1POP1 homolog, ribonuclease P/MRP subunit. (953 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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