(22 nodes) Filamentous actin, and NADPH:sulfur oxidoreductase activity network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101165171	Uncharacterized protein. (672 aa)
	pdlim3	PDZ and LIM domain 3a. (348 aa)
	smtnl2	Smoothelin, like. (534 aa)
	LOC101168991	LIM domain binding 3b. (290 aa)
	pdlim2	PDZ and LIM domain 2 (mystique). (360 aa)
	LOC101172084	MICAL like 1b, duplicate 2. (745 aa)
	LOC101165995	Calponin-homology (CH) domain-containing protein. (592 aa)
	LOC101159063	Uncharacterized protein. (687 aa)
	pdlim4	PDZ and LIM domain 4. (334 aa)
	LOC101174195	PDZ and LIM domain 5a. (571 aa)
	ENSORLP00000036166	FAD_binding_3 domain-containing protein. (285 aa)
	specc1	Sperm antigen with calponin homology and coiled-coil domains 1. (1086 aa)
	ehbp1	EH domain binding protein 1. (1264 aa)
	specc1l	Sperm antigen with calponin homology and coiled-coil domains 1-like a. (1113 aa)
	pdlim7	PDZ and LIM domain 7. (491 aa)
	LOC101166813	Smoothelin a. (239 aa)
	LOC101158216	PDZ and LIM domain 5b. (609 aa)
	clmn	Calmin. (1114 aa)
	ENSORLP00000044829	Calponin-homology (CH) domain-containing protein. (122 aa)
	LOC101157163	Uncharacterized protein. (799 aa)
	cntfa	Uncharacterized protein. (200 aa)
	LOC101157556	Uncharacterized protein. (3723 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000036166	ENSORLP00000044829	ENSORLP00000036166	ENSORLP00000044829	FAD_binding_3 domain-containing protein.	Calponin-homology (CH) domain-containing protein.	0.807
ENSORLP00000044829	ENSORLP00000036166	ENSORLP00000044829	ENSORLP00000036166	Calponin-homology (CH) domain-containing protein.	FAD_binding_3 domain-containing protein.	0.807
ENSORLP00000044829	LOC101157163	ENSORLP00000044829	ENSORLP00000044895	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.602
ENSORLP00000044829	LOC101157556	ENSORLP00000044829	ENSORLP00000045279	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.602
ENSORLP00000044829	LOC101158216	ENSORLP00000044829	ENSORLP00000042332	Calponin-homology (CH) domain-containing protein.	PDZ and LIM domain 5b.	0.551
ENSORLP00000044829	LOC101159063	ENSORLP00000044829	ENSORLP00000019904	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.578
ENSORLP00000044829	LOC101165171	ENSORLP00000044829	ENSORLP00000003266	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.547
ENSORLP00000044829	LOC101165995	ENSORLP00000044829	ENSORLP00000018582	Calponin-homology (CH) domain-containing protein.	Calponin-homology (CH) domain-containing protein.	0.573
ENSORLP00000044829	LOC101166813	ENSORLP00000044829	ENSORLP00000040953	Calponin-homology (CH) domain-containing protein.	Smoothelin a.	0.575
ENSORLP00000044829	LOC101168991	ENSORLP00000044829	ENSORLP00000013126	Calponin-homology (CH) domain-containing protein.	LIM domain binding 3b.	0.561
ENSORLP00000044829	LOC101172084	ENSORLP00000044829	ENSORLP00000018270	Calponin-homology (CH) domain-containing protein.	MICAL like 1b, duplicate 2.	0.609
ENSORLP00000044829	LOC101174195	ENSORLP00000044829	ENSORLP00000034187	Calponin-homology (CH) domain-containing protein.	PDZ and LIM domain 5a.	0.551
ENSORLP00000044829	clmn	ENSORLP00000044829	ENSORLP00000042540	Calponin-homology (CH) domain-containing protein.	Calmin.	0.542
ENSORLP00000044829	ehbp1	ENSORLP00000044829	ENSORLP00000038422	Calponin-homology (CH) domain-containing protein.	EH domain binding protein 1.	0.602
ENSORLP00000044829	pdlim2	ENSORLP00000044829	ENSORLP00000014313	Calponin-homology (CH) domain-containing protein.	PDZ and LIM domain 2 (mystique).	0.551
ENSORLP00000044829	pdlim3	ENSORLP00000044829	ENSORLP00000010329	Calponin-homology (CH) domain-containing protein.	PDZ and LIM domain 3a.	0.551
ENSORLP00000044829	pdlim4	ENSORLP00000044829	ENSORLP00000023787	Calponin-homology (CH) domain-containing protein.	PDZ and LIM domain 4.	0.551
ENSORLP00000044829	pdlim7	ENSORLP00000044829	ENSORLP00000040742	Calponin-homology (CH) domain-containing protein.	PDZ and LIM domain 7.	0.551
ENSORLP00000044829	smtnl2	ENSORLP00000044829	ENSORLP00000012354	Calponin-homology (CH) domain-containing protein.	Smoothelin, like.	0.576
ENSORLP00000044829	specc1	ENSORLP00000044829	ENSORLP00000037774	Calponin-homology (CH) domain-containing protein.	Sperm antigen with calponin homology and coiled-coil domains 1.	0.540