STRINGSTRING
LOC101158472 LOC101158472 lmnb2 lmnb2 LOC101160250 LOC101160250 LOC101165523 LOC101165523 vrk1 vrk1 lemd3 lemd3 lmna lmna H2MXM9_ORYLA H2MXM9_ORYLA Rif1 Rif1 LOC101171770 LOC101171770 LOC101168604 LOC101168604 banf1 banf1 ankle2 ankle2 CASP6 CASP6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101158472VRK serine/threonine kinase 2. (544 aa)
lmnb2Lamin B2; Belongs to the intermediate filament family. (579 aa)
LOC101160250Uncharacterized protein; Belongs to the intermediate filament family. (640 aa)
LOC101165523Uncharacterized protein. (323 aa)
vrk1VRK serine/threonine kinase 1; Belongs to the protein kinase superfamily. (433 aa)
lemd3LEM domain containing 3. (804 aa)
lmnaLamin A; Belongs to the intermediate filament family. (634 aa)
H2MXM9_ORYLACaspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (209 aa)
Rif1Uncharacterized protein. (1520 aa)
LOC101171770Uncharacterized protein. (90 aa)
LOC101168604Lamin L3; Belongs to the intermediate filament family. (704 aa)
banf1Barrier to autointegration factor 1. (90 aa)
ankle2Ankyrin repeat and LEM domain containing 2. (966 aa)
CASP6Caspase 6; Belongs to the peptidase C14A family. (292 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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