(18 nodes) Mixed, incl. NIDO domain, and RTP801-like network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hsd17b14	Hydroxysteroid (17-beta) dehydrogenase 14. (262 aa)
	nid2	Nidogen 2a (osteonidogen). (1523 aa)
	LOC101156443	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (326 aa)
	LOC101155791	Uncharacterized protein. (228 aa)
	ddit4	DNA-damage-inducible transcript 4. (225 aa)
	LOC101156698	Uncharacterized protein. (678 aa)
	ITPRID2	ITPR interacting domain containing 2. (1211 aa)
	LOC101162078	Zonadhesin, like. (3966 aa)
	LOC101164925	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (528 aa)
	LOC101174925	Es1 protein. (269 aa)
	nid1	Nidogen 1a. (1191 aa)
	tecta	Tectorin alpha. (2120 aa)
	LOC101171549	Nidogen 1b. (1301 aa)
	LOC101157398	Uncharacterized protein. (2459 aa)
	tiprl	TIP41, TOR signaling pathway regulator-like (S. cerevisiae). (275 aa)
	LOC101158587	Uncharacterized protein. (186 aa)
	LOC110016650	Speriolin_C domain-containing protein. (298 aa)
	LOC101174124	Tubulin folding cofactor E-like b. (432 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ITPRID2	LOC101155791	ENSORLP00000013238	ENSORLP00000008534	ITPR interacting domain containing 2.	Uncharacterized protein.	0.439
ITPRID2	LOC101156443	ENSORLP00000013238	ENSORLP00000007980	ITPR interacting domain containing 2.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.501
ITPRID2	LOC101156698	ENSORLP00000013238	ENSORLP00000011643	ITPR interacting domain containing 2.	Uncharacterized protein.	0.499
ITPRID2	LOC101157398	ENSORLP00000013238	ENSORLP00000029612	ITPR interacting domain containing 2.	Uncharacterized protein.	0.416
ITPRID2	LOC101158587	ENSORLP00000013238	ENSORLP00000036219	ITPR interacting domain containing 2.	Uncharacterized protein.	0.499
ITPRID2	LOC101162078	ENSORLP00000013238	ENSORLP00000013290	ITPR interacting domain containing 2.	Zonadhesin, like.	0.416
ITPRID2	LOC101164925	ENSORLP00000013238	ENSORLP00000015085	ITPR interacting domain containing 2.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.430
ITPRID2	LOC110016650	ENSORLP00000013238	ENSORLP00000041033	ITPR interacting domain containing 2.	Speriolin_C domain-containing protein.	0.453
ITPRID2	hsd17b14	ENSORLP00000013238	ENSORLP00000001965	ITPR interacting domain containing 2.	Hydroxysteroid (17-beta) dehydrogenase 14.	0.584
LOC101155791	ITPRID2	ENSORLP00000008534	ENSORLP00000013238	Uncharacterized protein.	ITPR interacting domain containing 2.	0.439
LOC101155791	LOC101156443	ENSORLP00000008534	ENSORLP00000007980	Uncharacterized protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.435
LOC101155791	LOC101156698	ENSORLP00000008534	ENSORLP00000011643	Uncharacterized protein.	Uncharacterized protein.	0.439
LOC101155791	LOC101158587	ENSORLP00000008534	ENSORLP00000036219	Uncharacterized protein.	Uncharacterized protein.	0.443
LOC101155791	LOC110016650	ENSORLP00000008534	ENSORLP00000041033	Uncharacterized protein.	Speriolin_C domain-containing protein.	0.435
LOC101155791	ddit4	ENSORLP00000008534	ENSORLP00000011504	Uncharacterized protein.	DNA-damage-inducible transcript 4.	0.904
LOC101156443	ITPRID2	ENSORLP00000007980	ENSORLP00000013238	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	ITPR interacting domain containing 2.	0.501
LOC101156443	LOC101155791	ENSORLP00000007980	ENSORLP00000008534	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Uncharacterized protein.	0.435
LOC101156443	LOC101156698	ENSORLP00000007980	ENSORLP00000011643	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Uncharacterized protein.	0.501
LOC101156443	LOC101157398	ENSORLP00000007980	ENSORLP00000029612	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Uncharacterized protein.	0.407
LOC101156443	LOC101158587	ENSORLP00000007980	ENSORLP00000036219	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Uncharacterized protein.	0.535