(14 nodes) Mixed, incl. SERTA motif, and Hyalurononglucosaminidase activity network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101169103	Hyaluronidase. (445 aa)
	olfm3	Olfactomedin 3a. (457 aa)
	cemip2	Cell migration inducing hyaluronidase 2. (1386 aa)
	mog-12	Homeobox domain-containing protein. (301 aa)
	itgbl1	Integrin, beta-like 1. (486 aa)
	sh3rf3	SH3 domain containing ring finger 3. (845 aa)
	cdca4	Cell division cycle associated 4. (347 aa)
	LOC101168099	Dehydrogenase/reductase (SDR family) X-linked; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (361 aa)
	SERTAD2	SERTA domain containing 2b. (416 aa)
	ENSORLP00000028045	Si:dkey-177p2.6. (252 aa)
	letm1	Leucine zipper-EF-hand containing transmembrane protein 1. (780 aa)
	blvrb	SERTA domain-containing protein. (316 aa)
	FGF14	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (270 aa)
	LOC105357543	SERTA domain containing 4. (367 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000028045	LOC105357543	ENSORLP00000028045	ENSORLP00000044655	Si:dkey-177p2.6.	SERTA domain containing 4.	0.474
ENSORLP00000028045	cdca4	ENSORLP00000028045	ENSORLP00000022453	Si:dkey-177p2.6.	Cell division cycle associated 4.	0.631
FGF14	cdca4	ENSORLP00000043634	ENSORLP00000022453	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Cell division cycle associated 4.	0.439
FGF14	cemip2	ENSORLP00000043634	ENSORLP00000013537	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Cell migration inducing hyaluronidase 2.	0.436
FGF14	itgbl1	ENSORLP00000043634	ENSORLP00000013779	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Integrin, beta-like 1.	0.415
FGF14	letm1	ENSORLP00000043634	ENSORLP00000035680	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Leucine zipper-EF-hand containing transmembrane protein 1.	0.439
FGF14	mog-12	ENSORLP00000043634	ENSORLP00000013627	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Homeobox domain-containing protein.	0.433
FGF14	olfm3	ENSORLP00000043634	ENSORLP00000007069	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Olfactomedin 3a.	0.511
FGF14	sh3rf3	ENSORLP00000043634	ENSORLP00000019915	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	SH3 domain containing ring finger 3.	0.452
LOC101168099	cdca4	ENSORLP00000025570	ENSORLP00000022453	Dehydrogenase/reductase (SDR family) X-linked; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Cell division cycle associated 4.	0.516
LOC101168099	itgbl1	ENSORLP00000025570	ENSORLP00000013779	Dehydrogenase/reductase (SDR family) X-linked; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Integrin, beta-like 1.	0.451
LOC101168099	letm1	ENSORLP00000025570	ENSORLP00000035680	Dehydrogenase/reductase (SDR family) X-linked; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Leucine zipper-EF-hand containing transmembrane protein 1.	0.501
LOC101168099	mog-12	ENSORLP00000025570	ENSORLP00000013627	Dehydrogenase/reductase (SDR family) X-linked; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Homeobox domain-containing protein.	0.487
LOC101168099	sh3rf3	ENSORLP00000025570	ENSORLP00000019915	Dehydrogenase/reductase (SDR family) X-linked; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	SH3 domain containing ring finger 3.	0.578
LOC101169103	cemip2	ENSORLP00000004611	ENSORLP00000013537	Hyaluronidase.	Cell migration inducing hyaluronidase 2.	0.560
LOC101169103	sh3rf3	ENSORLP00000004611	ENSORLP00000019915	Hyaluronidase.	SH3 domain containing ring finger 3.	0.486
LOC105357543	ENSORLP00000028045	ENSORLP00000044655	ENSORLP00000028045	SERTA domain containing 4.	Si:dkey-177p2.6.	0.474
LOC105357543	cdca4	ENSORLP00000044655	ENSORLP00000022453	SERTA domain containing 4.	Cell division cycle associated 4.	0.665
SERTAD2	blvrb	ENSORLP00000027899	ENSORLP00000039629	SERTA domain containing 2b.	SERTA domain-containing protein.	0.413
blvrb	SERTAD2	ENSORLP00000039629	ENSORLP00000027899	SERTA domain-containing protein.	SERTA domain containing 2b.	0.413