41 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hoxD4b	HoxD4b. (245 aa)
	meis1	Meis homeobox 1 b. (388 aa)
	LOC101160743	Homeobox A1a. (323 aa)
	hoxA2a	HoxA2a. (359 aa)
	LOC101172830	Homeobox A4. (249 aa)
	HOXA7	Homeobox A7. (235 aa)
	LOC101161418	Homeobox domain-containing protein. (379 aa)
	LOC101161653	Homeobox A11a. (300 aa)
	LOC101158794-2	Homeobox A10b. (320 aa)
	hoxc8	Homeobox C10a. (376 aa)
	hoxc6	Homeobox C6a. (235 aa)
	hoxc9	Homeobox protein Hox-C9; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family. (262 aa)
	hoxc8-2	HoxC8a. (250 aa)
	LOC101174425	Homeobox C5a. (228 aa)
	hoxc4	Homeobox protein Hox-C4; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Deformed subfamily. (261 aa)
	LOC101154966	Myeloid ecotropic viral integration site 3. (448 aa)
	hoxb1	Homeobox B1b. (278 aa)
	Hoxb3	Homeobox domain-containing protein. (242 aa)
	LOC101164012	Homeobox B6b. (251 aa)
	meis2	Meis homeobox 2a. (478 aa)
	pbx1	Homeobox domain-containing protein. (428 aa)
	LOC101160104	Pre-B-cell leukemia homeobox 1b. (428 aa)
	LOC101175240	Homeobox B13a. (323 aa)
	hoxb9	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (282 aa)
	LOC101155275	Homeobox domain-containing protein. (259 aa)
	LOC101169786	HoxB5a. (311 aa)
	LOC101170024	Homeobox B4a. (280 aa)
	hoxb2	Homeobox B2a. (425 aa)
	LOC101170520	Homeobox B1a. (394 aa)
	pknox1	Pbx/knotted 1 homeobox 1.1. (439 aa)
	LOC100301594	Homeobox A4a. (416 aa)
	LOC101169540	Homeobox B8a. (274 aa)
	LOC101159440	Pre-B-cell leukemia transcription factor 4. (381 aa)
	hoxa9	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (263 aa)
	ENSORLP00000033948	Homeobox A5a. (302 aa)
	pbx3	Homeobox domain-containing protein. (486 aa)
	LOC101172525	Pre-B-cell leukemia homeobox 2. (396 aa)
	pknox2	Pbx/knotted 1 homeobox 2. (488 aa)
	hoxb5	Homeobox B5b. (281 aa)
	LOC101171546	Meis homeobox 2b. (378 aa)
	LOC110015536	Homeobox B3a. (483 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000033948	HOXA7	ENSORLP00000033948	ENSORLP00000006334	Homeobox A5a.	Homeobox A7.	0.455
ENSORLP00000033948	Hoxb3	ENSORLP00000033948	ENSORLP00000015488	Homeobox A5a.	Homeobox domain-containing protein.	0.594
ENSORLP00000033948	LOC100301594	ENSORLP00000033948	ENSORLP00000026672	Homeobox A5a.	Homeobox A4a.	0.652
ENSORLP00000033948	LOC101164012	ENSORLP00000033948	ENSORLP00000015504	Homeobox A5a.	Homeobox B6b.	0.438
ENSORLP00000033948	LOC101169786	ENSORLP00000033948	ENSORLP00000021319	Homeobox A5a.	HoxB5a.	0.481
ENSORLP00000033948	LOC101170024	ENSORLP00000033948	ENSORLP00000021329	Homeobox A5a.	Homeobox B4a.	0.661
ENSORLP00000033948	hoxA2a	ENSORLP00000033948	ENSORLP00000006289	Homeobox A5a.	HoxA2a.	0.471
ENSORLP00000033948	hoxb5	ENSORLP00000033948	ENSORLP00000039816	Homeobox A5a.	Homeobox B5b.	0.491
ENSORLP00000033948	hoxc8	ENSORLP00000033948	ENSORLP00000009925	Homeobox A5a.	Homeobox C10a.	0.435
ENSORLP00000033948	hoxc9	ENSORLP00000033948	ENSORLP00000009954	Homeobox A5a.	Homeobox protein Hox-C9; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family.	0.430
HOXA7	ENSORLP00000033948	ENSORLP00000006334	ENSORLP00000033948	Homeobox A7.	Homeobox A5a.	0.455
HOXA7	Hoxb3	ENSORLP00000006334	ENSORLP00000015488	Homeobox A7.	Homeobox domain-containing protein.	0.555
HOXA7	LOC100301594	ENSORLP00000006334	ENSORLP00000026672	Homeobox A7.	Homeobox A4a.	0.624
HOXA7	LOC101155275	ENSORLP00000006334	ENSORLP00000021317	Homeobox A7.	Homeobox domain-containing protein.	0.673
HOXA7	LOC101158794-2	ENSORLP00000006334	ENSORLP00000009546	Homeobox A7.	Homeobox A10b.	0.569
HOXA7	LOC101159440	ENSORLP00000006334	ENSORLP00000030537	Homeobox A7.	Pre-B-cell leukemia transcription factor 4.	0.461
HOXA7	LOC101160104	ENSORLP00000006334	ENSORLP00000020891	Homeobox A7.	Pre-B-cell leukemia homeobox 1b.	0.461
HOXA7	LOC101161418	ENSORLP00000006334	ENSORLP00000006344	Homeobox A7.	Homeobox domain-containing protein.	0.569
HOXA7	LOC101164012	ENSORLP00000006334	ENSORLP00000015504	Homeobox A7.	Homeobox B6b.	0.673
HOXA7	LOC101169786	ENSORLP00000006334	ENSORLP00000021319	Homeobox A7.	HoxB5a.	0.700