6 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101158988	E2F transcription factor 7. (795 aa)
	phlda2	Pleckstrin homology-like domain, family A, member 2. (138 aa)
	e2f8	E2F transcription factor 8. (908 aa)
	gmnc	Uncharacterized protein. (377 aa)
	rfx2	Regulatory factor X, 2 (influences HLA class II expression). (751 aa)
	LOC101165351	Forkhead box J1b. (446 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101158988	e2f8	ENSORLP00000015398	ENSORLP00000031199	E2F transcription factor 7.	E2F transcription factor 8.	0.684
LOC101165351	gmnc	ENSORLP00000038538	ENSORLP00000034395	Forkhead box J1b.	Uncharacterized protein.	0.640
LOC101165351	rfx2	ENSORLP00000038538	ENSORLP00000036414	Forkhead box J1b.	Regulatory factor X, 2 (influences HLA class II expression).	0.717
e2f8	LOC101158988	ENSORLP00000031199	ENSORLP00000015398	E2F transcription factor 8.	E2F transcription factor 7.	0.684
e2f8	phlda2	ENSORLP00000031199	ENSORLP00000023679	E2F transcription factor 8.	Pleckstrin homology-like domain, family A, member 2.	0.675
gmnc	LOC101165351	ENSORLP00000034395	ENSORLP00000038538	Uncharacterized protein.	Forkhead box J1b.	0.640
gmnc	rfx2	ENSORLP00000034395	ENSORLP00000036414	Uncharacterized protein.	Regulatory factor X, 2 (influences HLA class II expression).	0.536
phlda2	e2f8	ENSORLP00000023679	ENSORLP00000031199	Pleckstrin homology-like domain, family A, member 2.	E2F transcription factor 8.	0.675
rfx2	LOC101165351	ENSORLP00000036414	ENSORLP00000038538	Regulatory factor X, 2 (influences HLA class II expression).	Forkhead box J1b.	0.717
rfx2	gmnc	ENSORLP00000036414	ENSORLP00000034395	Regulatory factor X, 2 (influences HLA class II expression).	Uncharacterized protein.	0.536