STRINGSTRING
ercc4 ercc4 msh3 msh3 pms2 pms2 ercc5 ercc5 msh5 msh5 msh2 msh2 msh6 msh6 pms1 pms1 bivm bivm msh4 msh4 ercc1 ercc1 mlh3 mlh3 xpa xpa mlh1 mlh1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ercc4Excision repair cross-complementation group 4. (889 aa)
msh3DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1090 aa)
pms2PMS1 homolog 2, mismatch repair system component. (828 aa)
ercc5Excision repair cross-complementation group 5. (1078 aa)
msh5MutS homolog 5. (817 aa)
msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (934 aa)
msh6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1381 aa)
pms1PMS1 homolog 1, mismatch repair system component. (991 aa)
bivmBasic, immunoglobulin-like variable motif containing. (506 aa)
msh4DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (901 aa)
ercc1Excision repair cross-complementation group 1. (341 aa)
mlh3MutL homolog 3 (E. coli). (1125 aa)
xpaXeroderma pigmentosum, complementation group A. (277 aa)
mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (720 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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