(17 nodes) DNA replication-independent chromatin assembly, and CAF-1 complex network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	atrx	ATRX chromatin remodeler. (2095 aa)
	LOC101163979	Anti-silencing function 1Ba histone chaperone. (197 aa)
	LOC101171430	Uncharacterized protein. (1871 aa)
	NASP	Nuclear autoantigenic sperm protein. (455 aa)
	LOC101158755	Nuclear autoantigenic sperm protein (histone-binding). (427 aa)
	CABIN1	Calcineurin binding protein 1. (1598 aa)
	chaf1a	Chromatin assembly factor 1, subunit A (p150). (750 aa)
	LOC101162764	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (1021 aa)
	LOC101163693	Histone H3.3. (136 aa)
	ASF1B	Uncharacterized protein. (199 aa)
	hat1	Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. (408 aa)
	chaf1b	Chromatin assembly factor 1, subunit B. (595 aa)
	LOC101167464	Death-domain associated protein. (729 aa)
	LOC101155824-2	Histone H4. (103 aa)
	ENSORLP00000037341	MEF2_binding domain-containing protein. (440 aa)
	ENSORLP00000041905	Histone H3; Belongs to the histone H3 family. (101 aa)
	LOC101158670	Uncharacterized protein. (767 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASF1B	CABIN1	ENSORLP00000027626	ENSORLP00000018045	Uncharacterized protein.	Calcineurin binding protein 1.	0.909
ASF1B	ENSORLP00000037341	ENSORLP00000027626	ENSORLP00000037341	Uncharacterized protein.	MEF2_binding domain-containing protein.	0.811
ASF1B	ENSORLP00000041905	ENSORLP00000027626	ENSORLP00000041905	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.583
ASF1B	LOC101155824-2	ENSORLP00000027626	ENSORLP00000036864	Uncharacterized protein.	Histone H4.	0.612
ASF1B	LOC101158670	ENSORLP00000027626	ENSORLP00000042794	Uncharacterized protein.	Uncharacterized protein.	0.908
ASF1B	LOC101158755	ENSORLP00000027626	ENSORLP00000013920	Uncharacterized protein.	Nuclear autoantigenic sperm protein (histone-binding).	0.856
ASF1B	LOC101162764	ENSORLP00000027626	ENSORLP00000021318	Uncharacterized protein.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.969
ASF1B	LOC101163693	ENSORLP00000027626	ENSORLP00000026643	Uncharacterized protein.	Histone H3.3.	0.583
ASF1B	LOC101167464	ENSORLP00000027626	ENSORLP00000033835	Uncharacterized protein.	Death-domain associated protein.	0.429
ASF1B	NASP	ENSORLP00000027626	ENSORLP00000013225	Uncharacterized protein.	Nuclear autoantigenic sperm protein.	0.856
ASF1B	chaf1a	ENSORLP00000027626	ENSORLP00000019034	Uncharacterized protein.	Chromatin assembly factor 1, subunit A (p150).	0.815
ASF1B	chaf1b	ENSORLP00000027626	ENSORLP00000033461	Uncharacterized protein.	Chromatin assembly factor 1, subunit B.	0.927
ASF1B	hat1	ENSORLP00000027626	ENSORLP00000031853	Uncharacterized protein.	Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG.	0.860
CABIN1	ASF1B	ENSORLP00000018045	ENSORLP00000027626	Calcineurin binding protein 1.	Uncharacterized protein.	0.909
CABIN1	ENSORLP00000037341	ENSORLP00000018045	ENSORLP00000037341	Calcineurin binding protein 1.	MEF2_binding domain-containing protein.	0.937
CABIN1	LOC101158670	ENSORLP00000018045	ENSORLP00000042794	Calcineurin binding protein 1.	Uncharacterized protein.	0.933
CABIN1	LOC101162764	ENSORLP00000018045	ENSORLP00000021318	Calcineurin binding protein 1.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.921
CABIN1	LOC101163979	ENSORLP00000018045	ENSORLP00000008847	Calcineurin binding protein 1.	Anti-silencing function 1Ba histone chaperone.	0.811
ENSORLP00000037341	ASF1B	ENSORLP00000037341	ENSORLP00000027626	MEF2_binding domain-containing protein.	Uncharacterized protein.	0.811
ENSORLP00000037341	CABIN1	ENSORLP00000037341	ENSORLP00000018045	MEF2_binding domain-containing protein.	Calcineurin binding protein 1.	0.937