(5 nodes) Melatonin metabolic process network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	aanat2	Arylalkylamine N-acetyltransferase 2. (208 aa)
	asmt	Acetylserotonin O-methyltransferase. (356 aa)
	LOC101155734	Acetylserotonin O-methyltransferase 2. (560 aa)
	aanat	N-acetyltransferase domain-containing protein. (216 aa)
	aanat1b	Arylalkylamine N-acetyltransferase 1b. (226 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101155734	aanat	ENSORLP00000022485	ENSORLP00000028585	Acetylserotonin O-methyltransferase 2.	N-acetyltransferase domain-containing protein.	0.970
LOC101155734	aanat1b	ENSORLP00000022485	ENSORLP00000038230	Acetylserotonin O-methyltransferase 2.	Arylalkylamine N-acetyltransferase 1b.	0.971
LOC101155734	aanat2	ENSORLP00000022485	ENSORLP00000006487	Acetylserotonin O-methyltransferase 2.	Arylalkylamine N-acetyltransferase 2.	0.965
LOC101155734	asmt	ENSORLP00000022485	ENSORLP00000019958	Acetylserotonin O-methyltransferase 2.	Acetylserotonin O-methyltransferase.	0.902
aanat	LOC101155734	ENSORLP00000028585	ENSORLP00000022485	N-acetyltransferase domain-containing protein.	Acetylserotonin O-methyltransferase 2.	0.970
aanat	aanat1b	ENSORLP00000028585	ENSORLP00000038230	N-acetyltransferase domain-containing protein.	Arylalkylamine N-acetyltransferase 1b.	0.902
aanat	aanat2	ENSORLP00000028585	ENSORLP00000006487	N-acetyltransferase domain-containing protein.	Arylalkylamine N-acetyltransferase 2.	0.902
aanat	asmt	ENSORLP00000028585	ENSORLP00000019958	N-acetyltransferase domain-containing protein.	Acetylserotonin O-methyltransferase.	0.972
aanat1b	LOC101155734	ENSORLP00000038230	ENSORLP00000022485	Arylalkylamine N-acetyltransferase 1b.	Acetylserotonin O-methyltransferase 2.	0.971
aanat1b	aanat	ENSORLP00000038230	ENSORLP00000028585	Arylalkylamine N-acetyltransferase 1b.	N-acetyltransferase domain-containing protein.	0.902
aanat1b	aanat2	ENSORLP00000038230	ENSORLP00000006487	Arylalkylamine N-acetyltransferase 1b.	Arylalkylamine N-acetyltransferase 2.	0.903
aanat1b	asmt	ENSORLP00000038230	ENSORLP00000019958	Arylalkylamine N-acetyltransferase 1b.	Acetylserotonin O-methyltransferase.	0.970
aanat2	LOC101155734	ENSORLP00000006487	ENSORLP00000022485	Arylalkylamine N-acetyltransferase 2.	Acetylserotonin O-methyltransferase 2.	0.965
aanat2	aanat	ENSORLP00000006487	ENSORLP00000028585	Arylalkylamine N-acetyltransferase 2.	N-acetyltransferase domain-containing protein.	0.902
aanat2	aanat1b	ENSORLP00000006487	ENSORLP00000038230	Arylalkylamine N-acetyltransferase 2.	Arylalkylamine N-acetyltransferase 1b.	0.903
aanat2	asmt	ENSORLP00000006487	ENSORLP00000019958	Arylalkylamine N-acetyltransferase 2.	Acetylserotonin O-methyltransferase.	0.956
asmt	LOC101155734	ENSORLP00000019958	ENSORLP00000022485	Acetylserotonin O-methyltransferase.	Acetylserotonin O-methyltransferase 2.	0.902
asmt	aanat	ENSORLP00000019958	ENSORLP00000028585	Acetylserotonin O-methyltransferase.	N-acetyltransferase domain-containing protein.	0.972
asmt	aanat1b	ENSORLP00000019958	ENSORLP00000038230	Acetylserotonin O-methyltransferase.	Arylalkylamine N-acetyltransferase 1b.	0.970
asmt	aanat2	ENSORLP00000019958	ENSORLP00000006487	Acetylserotonin O-methyltransferase.	Arylalkylamine N-acetyltransferase 2.	0.956