10 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101158262	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (921 aa)
	fgf4	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (188 aa)
	sox6a	HMG box domain-containing protein. (814 aa)
	sox6b	SRY-box containing gene 6b. (804 aa)
	FGF6	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (198 aa)
	cdh2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (908 aa)
	pkd1	Uncharacterized protein. (4114 aa)
	OTOR	Otoraplin. (129 aa)
	sox5	HMG box domain-containing protein. (880 aa)
	FGF6-2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (208 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101158262	cdh2	ENSORLP00000000094	ENSORLP00000021380	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
cdh2	LOC101158262	ENSORLP00000021380	ENSORLP00000000094	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
sox5	sox6a	ENSORLP00000034239	ENSORLP00000001551	HMG box domain-containing protein.	HMG box domain-containing protein.	0.645
sox5	sox6b	ENSORLP00000034239	ENSORLP00000008419	HMG box domain-containing protein.	SRY-box containing gene 6b.	0.643
sox6a	sox5	ENSORLP00000001551	ENSORLP00000034239	HMG box domain-containing protein.	HMG box domain-containing protein.	0.645
sox6b	sox5	ENSORLP00000008419	ENSORLP00000034239	SRY-box containing gene 6b.	HMG box domain-containing protein.	0.643