(49 nodes) Photoreceptor inner segment network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rd3	Retinal degeneration 3, GUCY2D regulator. (213 aa)
	myo3a	Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1596 aa)
	LOC101156666	Uncharacterized protein. (1426 aa)
	LOC101170803	Receptor expression-enhancing protein. (184 aa)
	mpp5	Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family. (646 aa)
	H2M7E1_ORYLA	Uncharacterized protein. (1371 aa)
	cerkl	Ceramide kinase-like. (550 aa)
	adgrv1	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family. (6175 aa)
	H2LZ82_ORYLA	Uncharacterized protein. (708 aa)
	crb1	Crumbs cell polarity complex component 1. (1325 aa)
	LOC101158106	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2. (350 aa)
	LOC101168054	Recoverin 3. (192 aa)
	LOC101155672	Guanylate kinase 1b. (193 aa)
	usp45	Ubiquitin carboxyl-terminal hydrolase. (791 aa)
	bbs4	Bardet-Biedl syndrome 4. (535 aa)
	LOC101164892	Recoverin a. (203 aa)
	LOC101165296	Ciliary rootlet coiled-coil, rootletin family member 2. (1372 aa)
	H2L2U9_ORYLA	SH3 and multiple ankyrin repeat domains 2a. (1494 aa)
	LOC101164298	Receptor expression-enhancing protein. (238 aa)
	guca1b	Uncharacterized protein. (197 aa)
	kifap3	Kinesin-associated protein 3b. (773 aa)
	guca1a	Guanylate cyclase activating protein 1. (189 aa)
	magi2	Membrane associated guanylate kinase, WW and PDZ domain containing 2a. (1331 aa)
	RS1	Retinoschisin 1. (253 aa)
	LOC101167616	Usher syndrome 1C. (529 aa)
	myo3b	Myosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1247 aa)
	IMPG1	Interphotoreceptor matrix proteoglycan 1. (783 aa)
	LOC101175509	Guanylate kinase 1a. (229 aa)
	LOC101156094	Whirlin b. (773 aa)
	CROCC	Ciliary rootlet coiled-coil, rootletin. (1677 aa)
	LOC101158659	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1. (350 aa)
	asrgl1	Asparaginase like 1. (310 aa)
	MPP5	Membrane palmitoylated protein 5; Belongs to the MAGUK family. (667 aa)
	ENSORLP00000028214	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (263 aa)
	LOC101163696	Uncharacterized protein. (2368 aa)
	ENSORLP00000029691	Uncharacterized protein. (1961 aa)
	fam161b	FAM161 centrosomal protein B. (535 aa)
	LOC105357236	Photoreceptor cilium actin regulator 2. (817 aa)
	pcare	Uncharacterized protein. (1124 aa)
	c16h8orf37	Uncharacterized protein. (218 aa)
	ENSORLP00000034875	Uncharacterized protein. (112 aa)
	LOC101173221	Membrane associated guanylate kinase, WW and PDZ domain containing 2b. (1528 aa)
	LOC101156114	Si:dkey-103j14.5. (309 aa)
	ENSORLP00000035838	FERM_f0 domain-containing protein. (122 aa)
	Ush2a	Uncharacterized protein. (1454 aa)
	crb2	Uncharacterized protein. (1464 aa)
	LOC101166347	Uncharacterized protein. (2142 aa)
	whrn	Whirlin a. (966 aa)
	LOC101165915	Recoverin 2. (193 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CROCC	LOC101165296	ENSORLP00000022962	ENSORLP00000001327	Ciliary rootlet coiled-coil, rootletin.	Ciliary rootlet coiled-coil, rootletin family member 2.	0.404
CROCC	bbs4	ENSORLP00000022962	ENSORLP00000002011	Ciliary rootlet coiled-coil, rootletin.	Bardet-Biedl syndrome 4.	0.479
ENSORLP00000028214	kifap3	ENSORLP00000028214	ENSORLP00000017409	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-associated protein 3b.	0.696
ENSORLP00000035838	H2L2U9_ORYLA	ENSORLP00000035838	ENSORLP00000000049	FERM_f0 domain-containing protein.	SH3 and multiple ankyrin repeat domains 2a.	0.902
ENSORLP00000035838	LOC101155672	ENSORLP00000035838	ENSORLP00000006887	FERM_f0 domain-containing protein.	Guanylate kinase 1b.	0.471
ENSORLP00000035838	LOC101175509	ENSORLP00000035838	ENSORLP00000021999	FERM_f0 domain-containing protein.	Guanylate kinase 1a.	0.471
ENSORLP00000035838	MPP5	ENSORLP00000035838	ENSORLP00000026030	FERM_f0 domain-containing protein.	Membrane palmitoylated protein 5; Belongs to the MAGUK family.	0.432
ENSORLP00000035838	mpp5	ENSORLP00000035838	ENSORLP00000014773	FERM_f0 domain-containing protein.	Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.	0.432
H2L2U9_ORYLA	ENSORLP00000035838	ENSORLP00000000049	ENSORLP00000035838	SH3 and multiple ankyrin repeat domains 2a.	FERM_f0 domain-containing protein.	0.902
H2LZ82_ORYLA	MPP5	ENSORLP00000011454	ENSORLP00000026030	Uncharacterized protein.	Membrane palmitoylated protein 5; Belongs to the MAGUK family.	0.687
H2LZ82_ORYLA	mpp5	ENSORLP00000011454	ENSORLP00000014773	Uncharacterized protein.	Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.	0.687
H2M7E1_ORYLA	LOC101156094	ENSORLP00000014396	ENSORLP00000022185	Uncharacterized protein.	Whirlin b.	0.429
H2M7E1_ORYLA	LOC101167616	ENSORLP00000014396	ENSORLP00000020709	Uncharacterized protein.	Usher syndrome 1C.	0.545
H2M7E1_ORYLA	adgrv1	ENSORLP00000014396	ENSORLP00000013145	Uncharacterized protein.	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	0.650
H2M7E1_ORYLA	whrn	ENSORLP00000014396	ENSORLP00000041625	Uncharacterized protein.	Whirlin a.	0.429
LOC101155672	ENSORLP00000035838	ENSORLP00000006887	ENSORLP00000035838	Guanylate kinase 1b.	FERM_f0 domain-containing protein.	0.471
LOC101155672	LOC101158106	ENSORLP00000006887	ENSORLP00000007558	Guanylate kinase 1b.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.856
LOC101155672	LOC101158659	ENSORLP00000006887	ENSORLP00000023702	Guanylate kinase 1b.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.453
LOC101155672	guca1a	ENSORLP00000006887	ENSORLP00000019893	Guanylate kinase 1b.	Guanylate cyclase activating protein 1.	0.657
LOC101156094	H2M7E1_ORYLA	ENSORLP00000022185	ENSORLP00000014396	Whirlin b.	Uncharacterized protein.	0.429