(33 nodes) Homologous chromosome pairing at meiosis network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	msh5	MutS homolog 5. (817 aa)
	LOC101157349	Uncharacterized protein. (190 aa)
	LOC101167311	Si:dkey-40g16.5. (138 aa)
	LOC101155880	HORMA domain containing 1. (345 aa)
	LOC101172571	FA complementation group D2. (1518 aa)
	C1orf146	Chromosome 1 open reading frame 146. (172 aa)
	spata22	Spermatogenesis associated 22. (371 aa)
	meioc	Uncharacterized protein. (804 aa)
	LOC101163096	Uncharacterized protein. (191 aa)
	rec8	REC8 meiotic recombination protein b. (566 aa)
	dmc1	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (342 aa)
	trip13	Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family. (470 aa)
	terb1	Telomere repeat binding bouquet formation protein 1. (704 aa)
	mlh1	MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (720 aa)
	ccnb1ip1	Cyclin B1 interacting protein 1. (292 aa)
	Syce3	Uncharacterized protein. (101 aa)
	terb2	Telomere repeat binding bouquet formation protein 2. (212 aa)
	ENSORLP00000028463	Rad21_Rec8_N domain-containing protein. (359 aa)
	majin	Uncharacterized protein. (209 aa)
	ndc1	NDC1 transmembrane nucleoporin. (668 aa)
	mei4	Uncharacterized protein. (302 aa)
	mlh3	MutL homolog 3 (E. coli). (1125 aa)
	msh4	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (901 aa)
	bag6	BCL2 associated athanogene 6. (1195 aa)
	ccne2	Cyclin E2; Belongs to the cyclin family. (393 aa)
	rnf212b	Si:ch211-10e2.1. (262 aa)
	sirt7	Sirtuin 7. (408 aa)
	LOC105355271	RING-type domain-containing protein. (229 aa)
	spo11	SPO11 initiator of meiotic double stranded breaks. (399 aa)
	LOC101168249	Uncharacterized protein. (895 aa)
	psmc3ip	PSMC3 interacting protein. (212 aa)
	meiob	Methionine sulfoxide reductase B1b. (462 aa)
	tex11	Testis expressed 11. (910 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1orf146	msh4	ENSORLP00000041536	ENSORLP00000020207	Chromosome 1 open reading frame 146.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.535
C1orf146	msh5	ENSORLP00000041536	ENSORLP00000011472	Chromosome 1 open reading frame 146.	MutS homolog 5.	0.444
C1orf146	tex11	ENSORLP00000041536	ENSORLP00000002407	Chromosome 1 open reading frame 146.	Testis expressed 11.	0.407
ENSORLP00000028463	LOC101157349	ENSORLP00000028463	ENSORLP00000045634	Rad21_Rec8_N domain-containing protein.	Uncharacterized protein.	0.424
ENSORLP00000028463	LOC101163096	ENSORLP00000028463	ENSORLP00000038348	Rad21_Rec8_N domain-containing protein.	Uncharacterized protein.	0.542
ENSORLP00000028463	LOC105355271	ENSORLP00000028463	ENSORLP00000015018	Rad21_Rec8_N domain-containing protein.	RING-type domain-containing protein.	0.411
ENSORLP00000028463	meioc	ENSORLP00000028463	ENSORLP00000038904	Rad21_Rec8_N domain-containing protein.	Uncharacterized protein.	0.486
ENSORLP00000028463	msh4	ENSORLP00000028463	ENSORLP00000020207	Rad21_Rec8_N domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.469
ENSORLP00000028463	msh5	ENSORLP00000028463	ENSORLP00000011472	Rad21_Rec8_N domain-containing protein.	MutS homolog 5.	0.430
ENSORLP00000028463	rec8	ENSORLP00000028463	ENSORLP00000037838	Rad21_Rec8_N domain-containing protein.	REC8 meiotic recombination protein b.	0.579
ENSORLP00000028463	spo11	ENSORLP00000028463	ENSORLP00000014612	Rad21_Rec8_N domain-containing protein.	SPO11 initiator of meiotic double stranded breaks.	0.531
LOC101155880	LOC101157349	ENSORLP00000043139	ENSORLP00000045634	HORMA domain containing 1.	Uncharacterized protein.	0.452
LOC101155880	LOC101163096	ENSORLP00000043139	ENSORLP00000038348	HORMA domain containing 1.	Uncharacterized protein.	0.549
LOC101155880	Syce3	ENSORLP00000043139	ENSORLP00000032054	HORMA domain containing 1.	Uncharacterized protein.	0.459
LOC101155880	dmc1	ENSORLP00000043139	ENSORLP00000037220	HORMA domain containing 1.	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	0.656
LOC101155880	meioc	ENSORLP00000043139	ENSORLP00000038904	HORMA domain containing 1.	Uncharacterized protein.	0.476
LOC101155880	msh4	ENSORLP00000043139	ENSORLP00000020207	HORMA domain containing 1.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.755
LOC101155880	msh5	ENSORLP00000043139	ENSORLP00000011472	HORMA domain containing 1.	MutS homolog 5.	0.444
LOC101155880	psmc3ip	ENSORLP00000043139	ENSORLP00000005602	HORMA domain containing 1.	PSMC3 interacting protein.	0.449
LOC101155880	rec8	ENSORLP00000043139	ENSORLP00000037838	HORMA domain containing 1.	REC8 meiotic recombination protein b.	0.534