STRINGSTRING
Syce3 Syce3 topaz1 topaz1 LOC101159737 LOC101159737 ddb1 ddb1 bhlhe23 bhlhe23 casp2 casp2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Syce3Uncharacterized protein. (101 aa)
topaz1Asp_Glu_race_2 domain-containing protein. (1451 aa)
LOC101159737Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family. (269 aa)
ddb1Damage-specific DNA binding protein 1. (1126 aa)
bhlhe23Basic helix-loop-helix family, member e23. (227 aa)
casp2Caspase 2, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (501 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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