20 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ramp2	Receptor (G protein-coupled) activity modifying protein 2. (225 aa)
	cspg4	Chondroitin sulfate proteoglycan 4. (2278 aa)
	LOC101173791	Si:dkey-193c22.2. (2396 aa)
	LOC101170271	Nerve growth factor receptor a (TNFR superfamily, member 16). (389 aa)
	LOC101170662	RGM domain family, member D. (410 aa)
	rgma	Repulsive guidance molecule BMP co-receptor a. (444 aa)
	LOC101165131	Uncharacterized protein. (149 aa)
	lrp6	Low-density lipoprotein receptor-related protein; Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Belongs to the LDLR family. (1623 aa)
	LOC101166088	Nerve growth factor receptor b. (434 aa)
	LOC101156047	Uncharacterized protein. (165 aa)
	LOC101171109	Hemojuvelin BMP co-receptor. (412 aa)
	cdon	Cell adhesion associated, oncogene regulated. (1141 aa)
	rgmb	Repulsive guidance molecule BMP co-receptor b. (475 aa)
	lrp5	Low density lipoprotein receptor-related protein 5. (1634 aa)
	ramp1	Receptor activity modifying protein 1. (186 aa)
	ackr3	Chemokine (C-X-C motif) receptor 7; Belongs to the G-protein coupled receptor 1 family. (381 aa)
	LOC100125525	Uncharacterized protein. (455 aa)
	LOC101159600	Uncharacterized protein. (2350 aa)
	LOC101155470	Uncharacterized protein. (210 aa)
	boc	BOC cell adhesion associated, oncogene regulated. (1051 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101155470	LOC101156047	ENSORLP00000042859	ENSORLP00000038587	Uncharacterized protein.	Uncharacterized protein.	0.973
LOC101155470	LOC101165131	ENSORLP00000042859	ENSORLP00000041960	Uncharacterized protein.	Uncharacterized protein.	0.951
LOC101155470	ramp1	ENSORLP00000042859	ENSORLP00000022680	Uncharacterized protein.	Receptor activity modifying protein 1.	0.951
LOC101155470	ramp2	ENSORLP00000042859	ENSORLP00000041600	Uncharacterized protein.	Receptor (G protein-coupled) activity modifying protein 2.	0.900
LOC101156047	LOC101155470	ENSORLP00000038587	ENSORLP00000042859	Uncharacterized protein.	Uncharacterized protein.	0.973
LOC101156047	LOC101165131	ENSORLP00000038587	ENSORLP00000041960	Uncharacterized protein.	Uncharacterized protein.	0.949
LOC101156047	ramp1	ENSORLP00000038587	ENSORLP00000022680	Uncharacterized protein.	Receptor activity modifying protein 1.	0.956
LOC101156047	ramp2	ENSORLP00000038587	ENSORLP00000041600	Uncharacterized protein.	Receptor (G protein-coupled) activity modifying protein 2.	0.968
LOC101165131	LOC101155470	ENSORLP00000041960	ENSORLP00000042859	Uncharacterized protein.	Uncharacterized protein.	0.951
LOC101165131	LOC101156047	ENSORLP00000041960	ENSORLP00000038587	Uncharacterized protein.	Uncharacterized protein.	0.949
LOC101165131	ramp1	ENSORLP00000041960	ENSORLP00000022680	Uncharacterized protein.	Receptor activity modifying protein 1.	0.902
LOC101165131	ramp2	ENSORLP00000041960	ENSORLP00000041600	Uncharacterized protein.	Receptor (G protein-coupled) activity modifying protein 2.	0.947
LOC101170662	rgma	ENSORLP00000005765	ENSORLP00000010565	RGM domain family, member D.	Repulsive guidance molecule BMP co-receptor a.	0.904
LOC101170662	rgmb	ENSORLP00000005765	ENSORLP00000030493	RGM domain family, member D.	Repulsive guidance molecule BMP co-receptor b.	0.905
boc	cdon	ENSORLP00000011399	ENSORLP00000031463	BOC cell adhesion associated, oncogene regulated.	Cell adhesion associated, oncogene regulated.	0.900
cdon	boc	ENSORLP00000031463	ENSORLP00000011399	Cell adhesion associated, oncogene regulated.	BOC cell adhesion associated, oncogene regulated.	0.900
lrp5	lrp6	ENSORLP00000026836	ENSORLP00000040318	Low density lipoprotein receptor-related protein 5.	Low-density lipoprotein receptor-related protein; Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Belongs to the LDLR family.	0.901
lrp6	lrp5	ENSORLP00000040318	ENSORLP00000026836	Low-density lipoprotein receptor-related protein; Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Belongs to the LDLR family.	Low density lipoprotein receptor-related protein 5.	0.901
ramp1	LOC101155470	ENSORLP00000022680	ENSORLP00000042859	Receptor activity modifying protein 1.	Uncharacterized protein.	0.951
ramp1	LOC101156047	ENSORLP00000022680	ENSORLP00000038587	Receptor activity modifying protein 1.	Uncharacterized protein.	0.956