(42 nodes) Acidic amino acid transport network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SLC17A6	Solute carrier family 17 member 6b. (581 aa)
	LOC101156485	Leucine rich repeat containing 8 VRAC subunit C. (793 aa)
	arl6ip5	PRA1 family protein. (191 aa)
	lrrc8d	Leucine rich repeat containing 8 VRAC subunit Da. (819 aa)
	cln8	CLN8 transmembrane ER and ERGIC protein. (350 aa)
	LOC101170557	Amino acid transporter. (553 aa)
	ENSORLP00000035319	Aa_trans domain-containing protein. (425 aa)
	ccdc77	Coiled-coil domain containing 77. (371 aa)
	LOC101159662	Amino acid transporter. (527 aa)
	Nf1	Uncharacterized protein. (506 aa)
	slc1a4	Amino acid transporter. (537 aa)
	SLC25A12	Solute carrier family 25 member 12; Belongs to the mitochondrial carrier (TC 2.A.29) family. (672 aa)
	LOC101159197	Si:ch211-106h11.1. (887 aa)
	LOC101160478	Solute carrier family 25 member 18; Belongs to the mitochondrial carrier (TC 2.A.29) family. (328 aa)
	H2MJT0_ORYLA	Uncharacterized protein. (589 aa)
	LOC101159534	Solute carrier family 25 member 12; Belongs to the mitochondrial carrier (TC 2.A.29) family. (683 aa)
	LOC101172725	Amino acid transporter. (578 aa)
	SLC1A3	Amino acid transporter. (526 aa)
	epm2a	EPM2A glucan phosphatase, laforin. (316 aa)
	slc1a2	Amino acid transporter. (526 aa)
	slc1a1	Amino acid transporter. (489 aa)
	LOC101175655	Solute carrier family 17 member 7a. (586 aa)
	LOC101165727	Solute carrier family 17 member 8. (580 aa)
	LOC111949093	Amino acid transporter. (579 aa)
	slc38a7	Solute carrier family 38 member 7. (456 aa)
	LOC101158273	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (334 aa)
	LOC101167994	MFS domain-containing protein. (577 aa)
	slc1a5	Solute carrier family 1 member 5. (527 aa)
	LOC101163009	GIPC PDZ domain containing family, member 1. (525 aa)
	gipc3	GIPC PDZ domain containing family, member 3. (334 aa)
	LOC101171405	Solute carrier family 25 member 55a; Belongs to the mitochondrial carrier (TC 2.A.29) family. (380 aa)
	LOC101168864-2	Solute carrier family 25 member 22a; Belongs to the mitochondrial carrier (TC 2.A.29) family. (312 aa)
	slc17a6	Solute carrier family 17 member 6. (581 aa)
	LOC101165386	Solute carrier family 32 member 1. (526 aa)
	LOC101170347	Solute carrier family 1 member 3a. (541 aa)
	slc3a1	Solute carrier family 3 member 1. (684 aa)
	LOC101164150	Aa_trans domain-containing protein. (522 aa)
	gipc2	GIPC PDZ domain containing family, member 2. (328 aa)
	LOC101174903	Amino acid transporter. (506 aa)
	LOC101174174	Leucine rich repeat containing 8 VRAC subunit Db. (847 aa)
	LOC101167791	Amino acid transporter. (663 aa)
	LOC101160301	Amino acid transporter. (527 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2MJT0_ORYLA	Nf1	ENSORLP00000018929	ENSORLP00000026133	Uncharacterized protein.	Uncharacterized protein.	0.943
LOC101156485	LOC101159197	ENSORLP00000042289	ENSORLP00000020372	Leucine rich repeat containing 8 VRAC subunit C.	Si:ch211-106h11.1.	0.535
LOC101156485	LOC101174174	ENSORLP00000042289	ENSORLP00000002833	Leucine rich repeat containing 8 VRAC subunit C.	Leucine rich repeat containing 8 VRAC subunit Db.	0.520
LOC101156485	lrrc8d	ENSORLP00000042289	ENSORLP00000040479	Leucine rich repeat containing 8 VRAC subunit C.	Leucine rich repeat containing 8 VRAC subunit Da.	0.520
LOC101159197	LOC101156485	ENSORLP00000020372	ENSORLP00000042289	Si:ch211-106h11.1.	Leucine rich repeat containing 8 VRAC subunit C.	0.535
LOC101160301	LOC101164150	ENSORLP00000001176	ENSORLP00000004710	Amino acid transporter.	Aa_trans domain-containing protein.	0.416
LOC101160301	LOC101165386	ENSORLP00000001176	ENSORLP00000007066	Amino acid transporter.	Solute carrier family 32 member 1.	0.416
LOC101164150	LOC101160301	ENSORLP00000004710	ENSORLP00000001176	Aa_trans domain-containing protein.	Amino acid transporter.	0.416
LOC101164150	slc1a2	ENSORLP00000004710	ENSORLP00000015111	Aa_trans domain-containing protein.	Amino acid transporter.	0.416
LOC101165386	LOC101160301	ENSORLP00000007066	ENSORLP00000001176	Solute carrier family 32 member 1.	Amino acid transporter.	0.416
LOC101165386	slc1a2	ENSORLP00000007066	ENSORLP00000015111	Solute carrier family 32 member 1.	Amino acid transporter.	0.699
LOC101174174	LOC101156485	ENSORLP00000002833	ENSORLP00000042289	Leucine rich repeat containing 8 VRAC subunit Db.	Leucine rich repeat containing 8 VRAC subunit C.	0.520
Nf1	H2MJT0_ORYLA	ENSORLP00000026133	ENSORLP00000018929	Uncharacterized protein.	Uncharacterized protein.	0.943
arl6ip5	slc1a1	ENSORLP00000041922	ENSORLP00000015090	PRA1 family protein.	Amino acid transporter.	0.589
lrrc8d	LOC101156485	ENSORLP00000040479	ENSORLP00000042289	Leucine rich repeat containing 8 VRAC subunit Da.	Leucine rich repeat containing 8 VRAC subunit C.	0.520
slc1a1	arl6ip5	ENSORLP00000015090	ENSORLP00000041922	Amino acid transporter.	PRA1 family protein.	0.589
slc1a1	slc3a1	ENSORLP00000015090	ENSORLP00000005633	Amino acid transporter.	Solute carrier family 3 member 1.	0.628
slc1a2	LOC101164150	ENSORLP00000015111	ENSORLP00000004710	Amino acid transporter.	Aa_trans domain-containing protein.	0.416
slc1a2	LOC101165386	ENSORLP00000015111	ENSORLP00000007066	Amino acid transporter.	Solute carrier family 32 member 1.	0.699
slc3a1	slc1a1	ENSORLP00000005633	ENSORLP00000015090	Solute carrier family 3 member 1.	Amino acid transporter.	0.628