STRINGSTRING
als2 als2 LOC101172966 LOC101172966 LOC101156506 LOC101156506 H2L587_ORYLA H2L587_ORYLA LOC101155198 LOC101155198 vps52 vps52 LOC101171319 LOC101171319 Snx1 Snx1 bloc1s2 bloc1s2 snx12 snx12 snx33 snx33 SNX18 SNX18 LOC101163736 LOC101163736 LOC101168291 LOC101168291 EHD2 EHD2 stx5 stx5 cltcl1 cltcl1 LOC101156386 LOC101156386 rab11fip4 rab11fip4 zfyve9 zfyve9 LOC101162835 LOC101162835 prepl prepl snx8 snx8 vps26b vps26b LOC101169568 LOC101169568 bloc1s1 bloc1s1 H2LPR1_ORYLA H2LPR1_ORYLA H2LQH7_ORYLA H2LQH7_ORYLA coro1c coro1c hgs hgs LOC101162540 LOC101162540 LOC101168369 LOC101168369 RIC1 RIC1 washc2c washc2c rgp1 rgp1 LOC101158774 LOC101158774 LOC101172996 LOC101172996 LOC101166646 LOC101166646 vps53 vps53 vcp vcp rhobtb3 rhobtb3 dennd1b dennd1b washc1 washc1 chmp1b chmp1b vta1 vta1 lrrc1 lrrc1 SNX27 SNX27 LOC101166717 LOC101166717 vps26a vps26a ankrd50 ankrd50 snx6 snx6 LOC101167502 LOC101167502 arfrp1 arfrp1 LOC101156446 LOC101156446 rbsn rbsn H2M6A2_ORYLA H2M6A2_ORYLA TMEM87B TMEM87B Cln5 Cln5 LOC101172793 LOC101172793 LOC101159837 LOC101159837 ankfy1 ankfy1 snx30 snx30 snx5 snx5 LOC105355489 LOC105355489 LOC101160240 LOC101160240 H2MA54_ORYLA H2MA54_ORYLA heatr5b heatr5b snf8 snf8 chmp2a chmp2a ap5b1 ap5b1 lyst lyst vps28 vps28 golt1b golt1b LOC101173541 LOC101173541 LOC101164612 LOC101164612 dennd1a dennd1a LOC101157554 LOC101157554 snx3 snx3 micall1 micall1 chmp7 chmp7 vps26c vps26c dennd10 dennd10 LOC101172084 LOC101172084 LOC101168453 LOC101168453 mvb12a mvb12a SRL SRL ubxn6 ubxn6 vps4a vps4a LOC101157659 LOC101157659 chmp1a chmp1a LOC101159906 LOC101159906 RAB11A RAB11A LOC101160399 LOC101160399 plekhj1 plekhj1 LOC101164752 LOC101164752 GCC2 GCC2 LOC101175396 LOC101175396 chmp2b chmp2b Vamp3 Vamp3 chmp3 chmp3 LOC101169531 LOC101169531 tbc1d23 tbc1d23 H2MN86_ORYLA H2MN86_ORYLA snx4 snx4 LOC101165235 LOC101165235 washc4 washc4 LOC101173779 LOC101173779 LOC101165932 LOC101165932 NSG1 NSG1 VPS4B VPS4B rab7a rab7a RAB8A RAB8A LOC101171748 LOC101171748 eps15 eps15 H2MTF8_ORYLA H2MTF8_ORYLA rab10 rab10 RAB9A RAB9A LOC101164680 LOC101164680 eipr1 eipr1 stam stam vps29 vps29 ap5s1 ap5s1 LOC101167240 LOC101167240 LOC101170877 LOC101170877 vps39 vps39 LOC101156293 LOC101156293 snx7 snx7 arhgap1 arhgap1 pikfyve pikfyve stx10 stx10 atp6ap1 atp6ap1 H2N0U4_ORYLA H2N0U4_ORYLA chmp6 chmp6 clec16a clec16a LOC101160203 LOC101160203 ENSORLP00000026387 ENSORLP00000026387 BET1L BET1L LOC101170198 LOC101170198 vps35l vps35l LOC101157689 LOC101157689 cmtm6 cmtm6 tbc1d10a tbc1d10a trarg1 trarg1 golt1a golt1a nsg2 nsg2 gbf1 gbf1 ap3d1 ap3d1 gripap1 gripap1 vps36 vps36 snx9 snx9 vps51 vps51 LOC101162870 LOC101162870 LOC101168905 LOC101168905 trappc10 trappc10 srl srl ENSORLP00000032217 ENSORLP00000032217 LEPROT LEPROT LAPTM4B LAPTM4B rab11fip3 rab11fip3 clcf1 clcf1 rab13 rab13 LOC101160952 LOC101160952 cltc cltc rab15 rab15 ENSORLP00000034349 ENSORLP00000034349 chmp4b chmp4b ENSORLP00000034742 ENSORLP00000034742 rab6b rab6b LOC101164901 LOC101164901 vps50 vps50 tbc1d10b tbc1d10b Zfyve9 Zfyve9 LOC101156358 LOC101156358 LOC101155415 LOC101155415 LOC101158204 LOC101158204 LOC101165082 LOC101165082 ENSORLP00000036389 ENSORLP00000036389 ENSORLP00000036645 ENSORLP00000036645 vps54 vps54 RAB41 RAB41 vps25 vps25 LOC101166919 LOC101166919 ap5z1 ap5z1 RAB29 RAB29 ap5m1 ap5m1 reps1 reps1 tmem50a tmem50a ptpn23 ptpn23 tbc1d5 tbc1d5 gga3 gga3 ENSORLP00000039403 ENSORLP00000039403 LOC101167092 LOC101167092 ENSORLP00000039705 ENSORLP00000039705 grip2 grip2 LOC101175311 LOC101175311 grip1 grip1 ankrd27 ankrd27 LOC101162740 LOC101162740 arl1 arl1 rab8b rab8b ENSORLP00000041402 ENSORLP00000041402 SLC66A2 SLC66A2 vti1a vti1a ENSORLP00000041578 ENSORLP00000041578 leprotl1 leprotl1 reps2 reps2 vti1b vti1b lamtor1 lamtor1 LOC101171030 LOC101171030 ENSORLP00000042887 ENSORLP00000042887 LOC101158863 LOC101158863 LOC101159542 LOC101159542 UBE2O UBE2O vps16 vps16 snx2 snx2 ENSORLP00000043979 ENSORLP00000043979 LOC101158422 LOC101158422 stx16 stx16 LOC101156359 LOC101156359 rab6a rab6a rab35 rab35
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
als2Alsin Rho guanine nucleotide exchange factor ALS2 b. (1522 aa)
LOC101172966Syntaxin 6; Belongs to the syntaxin family. (249 aa)
LOC101156506Uncharacterized protein. (564 aa)
H2L587_ORYLADUF3480 domain-containing protein. (297 aa)
LOC101155198Si:dkey-16l2.16. (210 aa)
vps52VPS52 subunit of GARP complex. (724 aa)
LOC101171319Uncharacterized protein; Belongs to the AAA ATPase family. (388 aa)
Snx1Sorting nexin 1b. (305 aa)
bloc1s2Biogenesis of lysosomal organelles complex-1, subunit 2. (182 aa)
snx12Sorting nexin 12. (162 aa)
snx33Sorting nexin. (557 aa)
SNX18Sorting nexin. (567 aa)
LOC101163736Sorting nexin 1a. (668 aa)
LOC101168291Zgc:153733. (261 aa)
EHD2EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (540 aa)
stx5Syntaxin 5A; Belongs to the syntaxin family. (329 aa)
cltcl1Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1658 aa)
LOC101156386Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (748 aa)
rab11fip4RAB11 family interacting protein 4 (class II) b. (513 aa)
zfyve9Zinc finger, FYVE domain containing 9a. (1096 aa)
LOC101162835Golgi transport 1Bb. (138 aa)
preplProlyl endopeptidase like. (718 aa)
snx8Sorting nexin 8a. (521 aa)
vps26bVPS26, retromer complex component B. (333 aa)
LOC101169568PH domain-containing protein. (374 aa)
bloc1s1Biogenesis of lysosomal organelles complex-1, subunit 1. (135 aa)
H2LPR1_ORYLARAB9B, member RAS oncogene family. (210 aa)
H2LQH7_ORYLARAB9A, member RAS oncogene family. (210 aa)
coro1cCoronin; Belongs to the WD repeat coronin family. (1195 aa)
hgsHepatocyte growth factor-regulated tyrosine kinase substrate. (766 aa)
LOC101162540RAB14, member RAS oncogene family. (215 aa)
LOC101168369Charged multivesicular body protein 6a. (208 aa)
RIC1RIC1 homolog, RAB6A GEF complex partner 1. (1398 aa)
washc2cCAP-ZIP_m domain-containing protein. (1389 aa)
rgp1GP1 homolog, RAB6A GEF complex partner 1. (386 aa)
LOC101158774Si:dkey-98f17.5. (431 aa)
LOC101172996Rab interacting lysosomal protein. (423 aa)
LOC101166646Coronin; Belongs to the WD repeat coronin family. (493 aa)
vps53VPS53 subunit of GARP complex. (789 aa)
vcpValosin containing protein; Belongs to the AAA ATPase family. (814 aa)
rhobtb3Si:dkey-6b12.5. (619 aa)
dennd1bDENN/MADD domain containing 1B. (868 aa)
washc1WAS protein family homolog 1. (364 aa)
chmp1bChromatin modifying protein 1B. (196 aa)
vta1Vesicle (multivesicular body) trafficking 1. (342 aa)
lrrc1Leucine rich repeat containing 1. (497 aa)
SNX27Sorting nexin 27. (595 aa)
LOC101166717Glutamate receptor interacting protein 2a. (1081 aa)
vps26aVPS26, retromer complex component A. (328 aa)
ankrd50Ankyrin repeat domain 50-like. (1400 aa)
snx6Sorting nexin; Involved in several stages of intracellular trafficking. (407 aa)
LOC101167502EH-domain containing 4; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (546 aa)
arfrp1ADP-ribosylation factor related protein 1. (201 aa)
LOC101156446Charged multivesicular body protein 4C. (223 aa)
rbsnRabenosyn, RAB effector. (777 aa)
H2M6A2_ORYLAIntersectin 1 (SH3 domain protein). (608 aa)
TMEM87BTransmembrane protein 87B. (570 aa)
Cln5CLN5 intracellular trafficking protein. (293 aa)
LOC101172793Si:dkey-76b14.2. (794 aa)
LOC101159837Sorting nexin. (551 aa)
ankfy1Ankyrin repeat and FYVE domain containing 1. (1166 aa)
snx30Sorting nexin family member 30. (446 aa)
snx5Sorting nexin 5. (375 aa)
LOC105355489Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (545 aa)
LOC101160240Si:ch211-11k18.4. (451 aa)
H2MA54_ORYLAUncharacterized protein. (489 aa)
heatr5bHEAT repeat containing 5B. (2112 aa)
snf8Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (257 aa)
chmp2aCharged multivesicular body protein 2A. (220 aa)
ap5b1Adaptor related protein complex 5 subunit beta 1. (934 aa)
lystLysosomal trafficking regulator. (3832 aa)
vps28Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (184 aa)
golt1bGolgi transport 1Ba. (128 aa)
LOC101173541Uncharacterized protein. (222 aa)
LOC101164612PX domain-containing protein. (430 aa)
dennd1aDENN/MADD domain containing 1A. (942 aa)
LOC101157554Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1677 aa)
snx3Sorting nexin 3. (162 aa)
micall1MICAL-like 1a. (897 aa)
chmp7Charged multivesicular body protein 7. (420 aa)
vps26cVPS26 endosomal protein sorting factor C. (297 aa)
dennd10DENN domain containing 10. (351 aa)
LOC101172084MICAL like 1b, duplicate 2. (745 aa)
LOC101168453Si:dkey-28n18.9. (368 aa)
mvb12aUncharacterized protein. (284 aa)
SRLSarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (783 aa)
ubxn6UBX domain protein 6. (439 aa)
vps4aVacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)
LOC101157659Sortilin. (535 aa)
chmp1aCharged multivesicular body protein 1A. (198 aa)
LOC101159906RAB11B, member RAS oncogene family, b. (301 aa)
RAB11ARAB11A, member RAS oncogene family. (217 aa)
LOC101160399RAB11B, member RAS oncogene family, a. (218 aa)
plekhj1Pleckstrin homology domain containing, family J member 1. (158 aa)
LOC101164752Ring finger protein 126. (356 aa)
GCC2GRIP domain-containing protein. (1663 aa)
LOC101175396Si:dkey-246g23.2. (244 aa)
chmp2bCharged multivesicular body protein 2Bb. (215 aa)
Vamp3Vesicle-associated membrane protein 3 (cellubrevin). (99 aa)
chmp3Charged multivesicular body protein 3. (220 aa)
LOC101169531Sortilin. (812 aa)
tbc1d23TBC1 domain family, member 23. (694 aa)
H2MN86_ORYLAADP-ribosylation factor 6b. (112 aa)
snx4Sorting nexin 4. (440 aa)
LOC101165235ATPase H+ transporting accessory protein 1b. (446 aa)
washc4WASH complex subunit 4. (1162 aa)
LOC101173779Zinc finger, FYVE domain containing 9b. (660 aa)
LOC101165932Intersectin 2a. (1576 aa)
NSG1Neuronal vesicle trafficking associated 1. (147 aa)
VPS4BVacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (437 aa)
rab7aUncharacterized protein. (207 aa)
RAB8ARAB8A, member RAS oncogene family. (206 aa)
LOC101171748RAB11 family interacting protein 4 (class II) a. (585 aa)
eps15Epidermal growth factor receptor pathway substrate 15. (1107 aa)
H2MTF8_ORYLAUncharacterized protein. (987 aa)
rab10RAB10, member RAS oncogene family. (201 aa)
RAB9ARAB9A, member RAS oncogene family. (201 aa)
LOC101164680Charged multivesicular body protein 5a. (262 aa)
eipr1EARP complex and GARP complex interacting protein 1. (387 aa)
stamSignal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (513 aa)
vps29Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (182 aa)
ap5s1Adaptor related protein complex 5 subunit sigma 1. (200 aa)
LOC101167240Uncharacterized protein. (983 aa)
LOC101170877RAB8A, member RAS oncogene family. (209 aa)
vps39VPS39 subunit of HOPS complex. (875 aa)
LOC101156293Uncharacterized protein. (550 aa)
snx7Sorting nexin 7. (414 aa)
arhgap1Uncharacterized protein. (430 aa)
pikfyvePhosphoinositide kinase, FYVE finger containing. (2070 aa)
stx10Syntaxin 10. (247 aa)
atp6ap1ATPase H+ transporting accessory protein 1a. (482 aa)
H2N0U4_ORYLADpy-30 histone methyltransferase complex regulatory subunit. (88 aa)
chmp6Charged multivesicular body protein 6. (221 aa)
clec16aC-type lectin domain containing 16A. (1094 aa)
LOC101160203VPS9 domain-containing protein. (1628 aa)
ENSORLP00000026387Uncharacterized protein. (773 aa)
BET1LBet1 golgi vesicular membrane trafficking protein like. (106 aa)
LOC101170198Lysosomal protein transmembrane 4 beta. (225 aa)
vps35lVPS35 endosomal protein sorting factor like. (970 aa)
LOC101157689RAB7a, member RAS oncogene family. (206 aa)
cmtm6MARVEL domain-containing protein. (182 aa)
tbc1d10aTBC1 domain family, member 10Ab. (474 aa)
trarg1Trafficking regulator of GLUT4 (SLC2A4) 1a. (183 aa)
golt1aGolgi transport 1A. (215 aa)
nsg2Neuronal vesicle trafficking associated 2. (201 aa)
gbf1Golgi brefeldin A resistant guanine nucleotide exchange factor 1. (1871 aa)
ap3d1Adaptor related protein complex 3 subunit delta 1. (1267 aa)
gripap1GRIP1 associated protein 1. (890 aa)
vps36Vacuolar protein sorting 36 homolog. (382 aa)
snx9Sorting nexin. (623 aa)
vps51VPS51 subunit of GARP complex. (844 aa)
LOC101162870Dynactin 1a. (1440 aa)
LOC101168905RAB15, member RAS oncogene family. (208 aa)
trappc10Trafficking protein particle complex 10. (1264 aa)
srlSarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (498 aa)
ENSORLP00000032217ANK_REP_REGION domain-containing protein. (137 aa)
LEPROTLeptin receptor overlapping transcript. (130 aa)
LAPTM4BLysosomal protein transmembrane 4 beta. (276 aa)
rab11fip3RAB11 family interacting protein 3 (class II). (1100 aa)
clcf1Cardiotrophin-like cytokine factor 1. (492 aa)
rab13Uncharacterized protein. (242 aa)
LOC101160952EH-domain containing 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (551 aa)
cltcClathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1695 aa)
rab15RAB15, member RAS oncogene family. (213 aa)
ENSORLP00000034349MIT domain-containing protein. (124 aa)
chmp4bCharged multivesicular body protein 4Bb. (251 aa)
ENSORLP00000034742Uncharacterized protein. (257 aa)
rab6bUncharacterized protein. (382 aa)
LOC101164901Rab-GAP TBC domain-containing protein. (1092 aa)
vps50VPS50 EARP/GARPII complex subunit. (993 aa)
tbc1d10bTBC1 domain family, member 10b. (871 aa)
Zfyve9SARA domain-containing protein. (101 aa)
LOC101156358Uncharacterized protein. (234 aa)
LOC101155415Epidermal growth factor receptor pathway substrate 15-like 1a. (958 aa)
LOC101158204TBC1 domain family, member 10Aa. (510 aa)
LOC101165082Zgc:162698. (629 aa)
ENSORLP00000036389FSA_C domain-containing protein. (378 aa)
ENSORLP00000036645EH domain-containing protein. (104 aa)
vps54VPS54 subunit of GARP complex. (986 aa)
RAB41Uncharacterized protein. (211 aa)
vps25Vacuolar protein sorting 25 homolog. (174 aa)
LOC101166919Dynactin 1b. (1259 aa)
ap5z1Adaptor related protein complex 5 subunit zeta 1. (813 aa)
RAB29RAB29, member RAS oncogene family. (204 aa)
ap5m1Adaptor related protein complex 5 subunit mu 1; Belongs to the adaptor complexes medium subunit family. (493 aa)
reps1RALBP1 associated Eps domain containing 1. (834 aa)
tmem50aTransmembrane protein 50A. (160 aa)
ptpn23Protein tyrosine phosphatase, non-receptor type 23, a. (1885 aa)
tbc1d5TBC1 domain family, member 5. (863 aa)
gga3Golgi associated, gamma adaptin ear containing, ARF binding protein 3b. (699 aa)
ENSORLP00000039403FSA_C domain-containing protein. (632 aa)
LOC101167092Uncharacterized protein. (215 aa)
ENSORLP00000039705Uncharacterized protein. (106 aa)
grip2Glutamate receptor interacting protein 2b. (1178 aa)
LOC101175311Si:ch73-389b16.2. (1515 aa)
grip1Glutamate receptor interacting protein 1. (1163 aa)
ankrd27Ankyrin repeat domain 27 (VPS9 domain). (1044 aa)
LOC101162740Uncharacterized protein. (263 aa)
arl1ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family. (233 aa)
rab8bMultiple EGF-like-domains 8. (207 aa)
ENSORLP00000041402ANK_REP_REGION domain-containing protein. (494 aa)
SLC66A2Solute carrier family 66 member 2. (271 aa)
vti1aVesicle transport through interaction with t-SNAREs 1A. (224 aa)
ENSORLP00000041578SH3 domain-containing protein. (72 aa)
leprotl1Leptin receptor overlapping transcript like 1. (131 aa)
reps2RALBP1 associated Eps domain containing 2. (665 aa)
vti1bVesicle transport through interaction with t-SNAREs 1B. (227 aa)
lamtor1Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1. (160 aa)
LOC101171030RAB11a, member RAS oncogene family, like. (216 aa)
ENSORLP00000042887FYVE domain-containing protein. (78 aa)
LOC101158863EH-domain containing 1a; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (532 aa)
LOC101159542Charged multivesicular body protein 5b. (220 aa)
UBE2OUbiquitin conjugating enzyme E2 O. (1361 aa)
vps16Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (832 aa)
snx2Sorting nexin 2. (513 aa)
ENSORLP00000043979Uncharacterized protein. (193 aa)
LOC101158422Mical-like 2b. (777 aa)
stx16Syntaxin 16; Belongs to the syntaxin family. (302 aa)
LOC101156359RAB6B, member RAS oncogene family. (208 aa)
rab6aRAB6A, member RAS oncogene family. (208 aa)
rab35RAB35, member RAS oncogene family b. (201 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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