STRINGSTRING
rag2 rag2 nhej1 nhej1 LOC101167049 LOC101167049 msh3 msh3 prkdc prkdc ung ung batf batf LOC101166554 LOC101166554 msh2 msh2 msh6 msh6 rnf8 rnf8 ercc1 ercc1 H2MU64_ORYLA H2MU64_ORYLA aicda aicda kiaa1841 kiaa1841 exosc3 exosc3 mlh1 mlh1 lig4 lig4 LOC101172133 LOC101172133 ccr6 ccr6 LOC101166932 LOC101166932
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rag2Recombination activating gene 2. (532 aa)
nhej1Nonhomologous end-joining factor 1. (312 aa)
LOC101167049CD40 ligand; Belongs to the tumor necrosis factor family. (239 aa)
msh3DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1090 aa)
prkdcProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (3962 aa)
ungUracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (298 aa)
batfBasic leucine zipper transcription factor, ATF-like. (121 aa)
LOC101166554ATPase family AAA domain containing 5a. (1758 aa)
msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (934 aa)
msh6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1381 aa)
rnf8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (516 aa)
ercc1Excision repair cross-complementation group 1. (341 aa)
H2MU64_ORYLAChemokine (C-C motif) receptor 6b; Belongs to the G-protein coupled receptor 1 family. (413 aa)
aicdaActivation-induced cytidine deaminase. (211 aa)
kiaa1841Si:ch211-189k9.2. (890 aa)
exosc3Exosome component 3. (250 aa)
mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (720 aa)
lig4DNA ligase. (912 aa)
LOC101172133ATPase family AAA domain containing 5b. (959 aa)
ccr6C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family. (376 aa)
LOC101166932X-ray repair complementing defective repair in Chinese hamster cells 4. (336 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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