STRINGSTRING
LOC101172966 LOC101172966 vps52 vps52 Snx1 Snx1 snx12 snx12 LOC101163736 LOC101163736 H2L9F2_ORYLA H2L9F2_ORYLA Dopey1 Dopey1 LOC101168291 LOC101168291 stx5 stx5 cltcl1 cltcl1 LOC101162835 LOC101162835 prepl prepl becn1 becn1 snx8 snx8 lamp1 lamp1 snx16 snx16 vps26b vps26b LOC101169568 LOC101169568 H2LPR1_ORYLA H2LPR1_ORYLA H2LQH7_ORYLA H2LQH7_ORYLA LOC101162540 LOC101162540 RIC1 RIC1 washc2c washc2c rgp1 rgp1 LOC101172996 LOC101172996 LOC101155031 LOC101155031 vps53 vps53 rhobtb3 rhobtb3 washc1 washc1 vps26a vps26a snx6 snx6 arfrp1 arfrp1 rbsn rbsn TMEM87B TMEM87B Cln5 Cln5 ankfy1 ankfy1 LOC101172824 LOC101172824 snx5 snx5 LOC101165914 LOC101165914 heatr5b heatr5b golt1b golt1b klhl20 klhl20 LOC101157554 LOC101157554 snx3 snx3 aktip aktip LOC101168453 LOC101168453 LOC101157659 LOC101157659 plekhj1 plekhj1 LOC101164752 LOC101164752 GCC2 GCC2 hook2 hook2 LOC101175396 LOC101175396 Vamp3 Vamp3 LOC101169531 LOC101169531 tbc1d23 tbc1d23 rab7a rab7a cln3 cln3 RAB9A RAB9A dop1b dop1b vps29 vps29 LOC101156293 LOC101156293 wdr91 wdr91 Kif16b Kif16b pikfyve pikfyve stx10 stx10 ap1ar ap1ar BET1L BET1L ENSORLP00000027254 ENSORLP00000027254 LOC101157689 LOC101157689 tbc1d10a tbc1d10a golt1a golt1a gbf1 gbf1 stx8 stx8 LOC101166118 LOC101166118 vps51 vps51 LOC101162870 LOC101162870 trappc10 trappc10 clcf1 clcf1 LOC101158853 LOC101158853 atg14 atg14 cltc cltc LOC101169108 LOC101169108 pik3c3 pik3c3 rab6b rab6b LOC101164901 LOC101164901 tbc1d10b tbc1d10b sys1 sys1 LOC101158204 LOC101158204 LOC101165082 LOC101165082 LOC101162166 LOC101162166 vps54 vps54 RAB41 RAB41 TANC2 TANC2 LOC101166919 LOC101166919 RAB29 RAB29 hook1 hook1 ptpn23 ptpn23 tbc1d5 tbc1d5 LOC101167092 LOC101167092 HOOK3 HOOK3 ankrd27 ankrd27 arl1 arl1 SLC66A2 SLC66A2 vti1a vti1a vti1b vti1b UBE2O UBE2O snx2 snx2 pik3r4 pik3r4 stx16 stx16 LOC101156359 LOC101156359 wdr81 wdr81 rab6a rab6a ENSORLP00000045141 ENSORLP00000045141
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101172966Syntaxin 6; Belongs to the syntaxin family. (249 aa)
vps52VPS52 subunit of GARP complex. (724 aa)
Snx1Sorting nexin 1b. (305 aa)
snx12Sorting nexin 12. (162 aa)
LOC101163736Sorting nexin 1a. (668 aa)
H2L9F2_ORYLAUncharacterized protein. (490 aa)
Dopey1Uncharacterized protein. (403 aa)
LOC101168291Zgc:153733. (261 aa)
stx5Syntaxin 5A; Belongs to the syntaxin family. (329 aa)
cltcl1Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1658 aa)
LOC101162835Golgi transport 1Bb. (138 aa)
preplProlyl endopeptidase like. (718 aa)
becn1Beclin 1. (446 aa)
snx8Sorting nexin 8a. (521 aa)
lamp1Lysosomal associated membrane protein 1a. (420 aa)
snx16Sorting nexin 16. (351 aa)
vps26bVPS26, retromer complex component B. (333 aa)
LOC101169568PH domain-containing protein. (374 aa)
H2LPR1_ORYLARAB9B, member RAS oncogene family. (210 aa)
H2LQH7_ORYLARAB9A, member RAS oncogene family. (210 aa)
LOC101162540RAB14, member RAS oncogene family. (215 aa)
RIC1RIC1 homolog, RAB6A GEF complex partner 1. (1398 aa)
washc2cCAP-ZIP_m domain-containing protein. (1389 aa)
rgp1GP1 homolog, RAB6A GEF complex partner 1. (386 aa)
LOC101172996Rab interacting lysosomal protein. (423 aa)
LOC101155031Coronin; Belongs to the WD repeat coronin family. (925 aa)
vps53VPS53 subunit of GARP complex. (789 aa)
rhobtb3Si:dkey-6b12.5. (619 aa)
washc1WAS protein family homolog 1. (364 aa)
vps26aVPS26, retromer complex component A. (328 aa)
snx6Sorting nexin; Involved in several stages of intracellular trafficking. (407 aa)
arfrp1ADP-ribosylation factor related protein 1. (201 aa)
rbsnRabenosyn, RAB effector. (777 aa)
TMEM87BTransmembrane protein 87B. (570 aa)
Cln5CLN5 intracellular trafficking protein. (293 aa)
ankfy1Ankyrin repeat and FYVE domain containing 1. (1166 aa)
LOC101172824Uncharacterized protein. (206 aa)
snx5Sorting nexin 5. (375 aa)
LOC101165914Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1356 aa)
heatr5bHEAT repeat containing 5B. (2112 aa)
golt1bGolgi transport 1Ba. (128 aa)
klhl20Kelch-like family member 20. (609 aa)
LOC101157554Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1677 aa)
snx3Sorting nexin 3. (162 aa)
aktipAkt interacting protein. (284 aa)
LOC101168453Si:dkey-28n18.9. (368 aa)
LOC101157659Sortilin. (535 aa)
plekhj1Pleckstrin homology domain containing, family J member 1. (158 aa)
LOC101164752Ring finger protein 126. (356 aa)
GCC2GRIP domain-containing protein. (1663 aa)
hook2Hook microtubule-tethering protein 2. (712 aa)
LOC101175396Si:dkey-246g23.2. (244 aa)
Vamp3Vesicle-associated membrane protein 3 (cellubrevin). (99 aa)
LOC101169531Sortilin. (812 aa)
tbc1d23TBC1 domain family, member 23. (694 aa)
rab7aUncharacterized protein. (207 aa)
cln3Battenin. (437 aa)
RAB9ARAB9A, member RAS oncogene family. (201 aa)
dop1bDOP1 leucine zipper like protein B. (2274 aa)
vps29Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (182 aa)
LOC101156293Uncharacterized protein. (550 aa)
wdr91WD repeat domain 91. (691 aa)
Kif16bKinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (369 aa)
pikfyvePhosphoinositide kinase, FYVE finger containing. (2070 aa)
stx10Syntaxin 10. (247 aa)
ap1arAdaptor related protein complex 1 associated regulatory protein. (306 aa)
BET1LBet1 golgi vesicular membrane trafficking protein like. (106 aa)
ENSORLP00000027254Dopey_N domain-containing protein. (110 aa)
LOC101157689RAB7a, member RAS oncogene family. (206 aa)
tbc1d10aTBC1 domain family, member 10Ab. (474 aa)
golt1aGolgi transport 1A. (215 aa)
gbf1Golgi brefeldin A resistant guanine nucleotide exchange factor 1. (1871 aa)
stx8Syntaxin 8. (238 aa)
LOC101166118Synaptotagmin VIIb. (671 aa)
vps51VPS51 subunit of GARP complex. (844 aa)
LOC101162870Dynactin 1a. (1440 aa)
trappc10Trafficking protein particle complex 10. (1264 aa)
clcf1Cardiotrophin-like cytokine factor 1. (492 aa)
LOC101158853Sortilin. (827 aa)
atg14Autophagy related 14. (576 aa)
cltcClathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1695 aa)
LOC101169108Synaptotagmin VIIa. (742 aa)
pik3c3Phosphatidylinositol 3-kinase catalytic subunit type 3. (884 aa)
rab6bUncharacterized protein. (382 aa)
LOC101164901Rab-GAP TBC domain-containing protein. (1092 aa)
tbc1d10bTBC1 domain family, member 10b. (871 aa)
sys1Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)
LOC101158204TBC1 domain family, member 10Aa. (510 aa)
LOC101165082Zgc:162698. (629 aa)
LOC101162166Family with sequence similarity 160 member A2. (1142 aa)
vps54VPS54 subunit of GARP complex. (986 aa)
RAB41Uncharacterized protein. (211 aa)
TANC2Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2. (2181 aa)
LOC101166919Dynactin 1b. (1259 aa)
RAB29RAB29, member RAS oncogene family. (204 aa)
hook1Hook microtubule-tethering protein 1. (750 aa)
ptpn23Protein tyrosine phosphatase, non-receptor type 23, a. (1885 aa)
tbc1d5TBC1 domain family, member 5. (863 aa)
LOC101167092Uncharacterized protein. (215 aa)
HOOK3Hook microtubule tethering protein 3. (742 aa)
ankrd27Ankyrin repeat domain 27 (VPS9 domain). (1044 aa)
arl1ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family. (233 aa)
SLC66A2Solute carrier family 66 member 2. (271 aa)
vti1aVesicle transport through interaction with t-SNAREs 1A. (224 aa)
vti1bVesicle transport through interaction with t-SNAREs 1B. (227 aa)
UBE2OUbiquitin conjugating enzyme E2 O. (1361 aa)
snx2Sorting nexin 2. (513 aa)
pik3r4Phosphoinositide-3-kinase, regulatory subunit 4. (1334 aa)
stx16Syntaxin 16; Belongs to the syntaxin family. (302 aa)
LOC101156359RAB6B, member RAS oncogene family. (208 aa)
wdr81WD repeat domain 81. (2052 aa)
rab6aRAB6A, member RAS oncogene family. (208 aa)
ENSORLP00000045141Si:ch73-29c22.1. (197 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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