(13 nodes) Transsulfuration network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101161192	Uncharacterized protein. (686 aa)
	cth	Cystathionase (cystathionine gamma-lyase), like. (416 aa)
	LOC101173123	Sulfurtransferase. (295 aa)
	LOC101169459	Sulfurtransferase. (296 aa)
	LOC101157387	Uncharacterized protein. (687 aa)
	LOC101164525	Uncharacterized protein. (678 aa)
	ENSORLP00000045397	Uncharacterized protein. (571 aa)
	LOC101169459-2	Sulfurtransferase. (349 aa)
	LOC101162160	Uncharacterized protein. (662 aa)
	ENSORLP00000038082	Uncharacterized protein. (568 aa)
	LOC101157877	Uncharacterized protein. (683 aa)
	LOC101174644	Uncharacterized protein. (681 aa)
	LOC101157921	Uncharacterized protein. (680 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000038082	cth	ENSORLP00000038082	ENSORLP00000009744	Uncharacterized protein.	Cystathionase (cystathionine gamma-lyase), like.	0.549
ENSORLP00000045397	cth	ENSORLP00000045397	ENSORLP00000009744	Uncharacterized protein.	Cystathionase (cystathionine gamma-lyase), like.	0.549
LOC101157387	cth	ENSORLP00000019152	ENSORLP00000009744	Uncharacterized protein.	Cystathionase (cystathionine gamma-lyase), like.	0.549
LOC101157877	cth	ENSORLP00000035913	ENSORLP00000009744	Uncharacterized protein.	Cystathionase (cystathionine gamma-lyase), like.	0.549
LOC101157921	cth	ENSORLP00000022933	ENSORLP00000009744	Uncharacterized protein.	Cystathionase (cystathionine gamma-lyase), like.	0.549
LOC101161192	cth	ENSORLP00000003306	ENSORLP00000009744	Uncharacterized protein.	Cystathionase (cystathionine gamma-lyase), like.	0.549
LOC101162160	cth	ENSORLP00000043910	ENSORLP00000009744	Uncharacterized protein.	Cystathionase (cystathionine gamma-lyase), like.	0.549
LOC101164525	cth	ENSORLP00000022664	ENSORLP00000009744	Uncharacterized protein.	Cystathionase (cystathionine gamma-lyase), like.	0.549
LOC101169459	cth	ENSORLP00000016916	ENSORLP00000009744	Sulfurtransferase.	Cystathionase (cystathionine gamma-lyase), like.	0.622
LOC101169459-2	LOC101173123	ENSORLP00000045124	ENSORLP00000013380	Sulfurtransferase.	Sulfurtransferase.	0.902
LOC101169459-2	cth	ENSORLP00000045124	ENSORLP00000009744	Sulfurtransferase.	Cystathionase (cystathionine gamma-lyase), like.	0.958
LOC101173123	LOC101169459-2	ENSORLP00000013380	ENSORLP00000045124	Sulfurtransferase.	Sulfurtransferase.	0.902
LOC101173123	cth	ENSORLP00000013380	ENSORLP00000009744	Sulfurtransferase.	Cystathionase (cystathionine gamma-lyase), like.	0.956
LOC101174644	cth	ENSORLP00000024640	ENSORLP00000009744	Uncharacterized protein.	Cystathionase (cystathionine gamma-lyase), like.	0.549
cth	ENSORLP00000038082	ENSORLP00000009744	ENSORLP00000038082	Cystathionase (cystathionine gamma-lyase), like.	Uncharacterized protein.	0.549
cth	ENSORLP00000045397	ENSORLP00000009744	ENSORLP00000045397	Cystathionase (cystathionine gamma-lyase), like.	Uncharacterized protein.	0.549
cth	LOC101157387	ENSORLP00000009744	ENSORLP00000019152	Cystathionase (cystathionine gamma-lyase), like.	Uncharacterized protein.	0.549
cth	LOC101157877	ENSORLP00000009744	ENSORLP00000035913	Cystathionase (cystathionine gamma-lyase), like.	Uncharacterized protein.	0.549
cth	LOC101157921	ENSORLP00000009744	ENSORLP00000022933	Cystathionase (cystathionine gamma-lyase), like.	Uncharacterized protein.	0.549
cth	LOC101161192	ENSORLP00000009744	ENSORLP00000003306	Cystathionase (cystathionine gamma-lyase), like.	Uncharacterized protein.	0.549