57 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
	mrpl1	Mitochondrial ribosomal protein L1. (330 aa)
	rpl7l1	Ribosomal protein L7-like 1. (247 aa)
	LOC101167075	Apolipoprotein Da, duplicate 1; Belongs to the calycin superfamily. Lipocalin family. (186 aa)
	Rpl35	Ribosomal protein L35. (122 aa)
	rpsa	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (301 aa)
	fau	40S ribosomal protein S30. (133 aa)
	mrps11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (248 aa)
	rps28	Ribosomal protein S28. (69 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (278 aa)
	RPL3L	Ribosomal protein L3 like. (315 aa)
	LOC101170718	Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (232 aa)
	LOC101170232	Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (195 aa)
	RPL5	Ribosomal protein L5b. (280 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (242 aa)
	rpl37a	Ribosomal protein L37a. (90 aa)
	eif2d	Eukaryotic translation initiation factor 2D. (590 aa)
	LOC101156845	40S ribosomal protein S27. (84 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (279 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC101170879	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	rpl7	Ribosomal protein L7. (245 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
	rpl4	Ribosomal protein L4. (369 aa)
	rps6	Ribosomal protein S6. (308 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (170 aa)
	rpl28	Ribosomal protein L28. (137 aa)
	rpl6	Ribosomal protein L6. (260 aa)
	rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (114 aa)
	RPL27A	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	RPS27	40S ribosomal protein S27. (87 aa)
	LOC101166874	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (426 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
	LOC101160979	Ribosomal protein L10. (217 aa)
	ENSORLP00000034280	Uncharacterized protein. (95 aa)
	RPS29	Ribosomal protein S29. (72 aa)
	LOC101161566	Ribosomal protein L26. (169 aa)
	ENSORLP00000035584	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	LOC101160347	Ribosomal protein L5. (314 aa)
	rpl14	Ribosomal protein L14. (137 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (95 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	rps9	Ribosomal protein S9. (210 aa)
	rps23	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (150 aa)
	dhx29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1379 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (269 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	LOC101161046	40S ribosomal protein S27. (106 aa)
	rpl18	Ribosomal protein L18. (213 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	aknad1	Uncharacterized protein. (1237 aa)
	LOC101170669	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	ENSORLP00000045044	Ribosomal_L6e_N domain-containing protein. (271 aa)
	RPL7A	Ribosomal protein L7a. (266 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000034280	ENSORLP00000035584	ENSORLP00000034280	ENSORLP00000035584	Uncharacterized protein.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.992
ENSORLP00000034280	ENSORLP00000045044	ENSORLP00000034280	ENSORLP00000045044	Uncharacterized protein.	Ribosomal_L6e_N domain-containing protein.	0.975
ENSORLP00000034280	H2M970_ORYLA	ENSORLP00000034280	ENSORLP00000015051	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.953
ENSORLP00000034280	LOC101156845	ENSORLP00000034280	ENSORLP00000012527	Uncharacterized protein.	40S ribosomal protein S27.	0.944
ENSORLP00000034280	LOC101160347	ENSORLP00000034280	ENSORLP00000036420	Uncharacterized protein.	Ribosomal protein L5.	0.976
ENSORLP00000034280	LOC101160979	ENSORLP00000034280	ENSORLP00000034012	Uncharacterized protein.	Ribosomal protein L10.	0.986
ENSORLP00000034280	LOC101161046	ENSORLP00000034280	ENSORLP00000042731	Uncharacterized protein.	40S ribosomal protein S27.	0.905
ENSORLP00000034280	LOC101166874	ENSORLP00000034280	ENSORLP00000031901	Uncharacterized protein.	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.971
ENSORLP00000034280	LOC101170669	ENSORLP00000034280	ENSORLP00000045023	Uncharacterized protein.	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.991
ENSORLP00000034280	LOC101170879	ENSORLP00000034280	ENSORLP00000010350	Uncharacterized protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.979
ENSORLP00000034280	RPL19	ENSORLP00000034280	ENSORLP00000033229	Uncharacterized protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.979
ENSORLP00000034280	RPL27A	ENSORLP00000034280	ENSORLP00000001409	Uncharacterized protein.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.990
ENSORLP00000034280	RPL3L	ENSORLP00000034280	ENSORLP00000028729	Uncharacterized protein.	Ribosomal protein L3 like.	0.971
ENSORLP00000034280	RPL5	ENSORLP00000034280	ENSORLP00000017262	Uncharacterized protein.	Ribosomal protein L5b.	0.976
ENSORLP00000034280	RPL7A	ENSORLP00000034280	ENSORLP00000045809	Uncharacterized protein.	Ribosomal protein L7a.	0.991
ENSORLP00000034280	RPS27	ENSORLP00000034280	ENSORLP00000000731	Uncharacterized protein.	40S ribosomal protein S27.	0.944
ENSORLP00000034280	RPS29	ENSORLP00000034280	ENSORLP00000034380	Uncharacterized protein.	Ribosomal protein S29.	0.983
ENSORLP00000034280	Rpl35	ENSORLP00000034280	ENSORLP00000020671	Uncharacterized protein.	Ribosomal protein L35.	0.993
ENSORLP00000034280	aknad1	ENSORLP00000034280	ENSORLP00000044677	Uncharacterized protein.	Uncharacterized protein.	0.973
ENSORLP00000034280	fau	ENSORLP00000034280	ENSORLP00000018903	Uncharacterized protein.	40S ribosomal protein S30.	0.999