STRINGSTRING
vcl vcl nck1 nck1 LOC101166510 LOC101166510 LOC101169438 LOC101169438 golph3 golph3 LOC101171604 LOC101171604 arhgef6 arhgef6 ajuba ajuba nck2 nck2 LOC101172101 LOC101172101 LOC101166843 LOC101166843 ablim2 ablim2 ablim1 ablim1 LOC101164377 LOC101164377 LOC101159285 LOC101159285 WHAMM WHAMM LOC101166973 LOC101166973 LOC101156802 LOC101156802 LOC101160681 LOC101160681 H2LST2_ORYLA H2LST2_ORYLA ablim3 ablim3 LOC101165595 LOC101165595 wasf3 wasf3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
vclVinculin b. (1066 aa)
nck1Cytoplasmic protein. (392 aa)
LOC101166510Rho guanine nucleotide exchange factor (GEF) 7a. (779 aa)
LOC101169438Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. (1253 aa)
golph3Uncharacterized protein. (323 aa)
LOC101171604Zgc:66426. (233 aa)
arhgef6Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6. (764 aa)
ajubaAjuba. (694 aa)
nck2Cytoplasmic protein. (398 aa)
LOC101172101Vinculin a. (1135 aa)
LOC101166843AbLIM_anchor domain-containing protein. (336 aa)
ablim2Actin binding LIM protein family, member 2. (685 aa)
ablim1Actin binding LIM protein 1a. (699 aa)
LOC101164377Dematin actin binding protein. (405 aa)
LOC101159285Actin binding LIM protein family member 3. (682 aa)
WHAMMWASP homolog associated with actin, golgi membranes and microtubules. (776 aa)
LOC101166973Golgi phosphoprotein 3. (293 aa)
LOC101156802Rho guanine nucleotide exchange factor (GEF) 7b. (859 aa)
LOC101160681WH2 domain-containing protein. (450 aa)
H2LST2_ORYLAUncharacterized protein. (335 aa)
ablim3Actin binding LIM protein family, member 3. (695 aa)
LOC101165595Zgc:109889. (553 aa)
wasf3WASP family member 3b. (486 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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