10 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pop5	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (166 aa)
	pop1	POP1 homolog, ribonuclease P/MRP subunit. (953 aa)
	rpp40	Uncharacterized protein. (379 aa)
	rpp30	Ribonuclease P/MRP 30 subunit. (289 aa)
	pop4	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (221 aa)
	H2MDZ5_ORYLA	Ribonuclease P and MRP subunit p25, b. (217 aa)
	rpp38	Ribonuclease P/MRP 38 subunit. (275 aa)
	LOC101158762	Alba domain-containing protein. (187 aa)
	Pop7	Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences. (139 aa)
	LOC101167527	Ribonuclease P 21 subunit. (146 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2MDZ5_ORYLA	LOC101158762	ENSORLP00000016798	ENSORLP00000006164	Ribonuclease P and MRP subunit p25, b.	Alba domain-containing protein.	0.905
H2MDZ5_ORYLA	LOC101167527	ENSORLP00000016798	ENSORLP00000001942	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P 21 subunit.	0.994
H2MDZ5_ORYLA	Pop7	ENSORLP00000016798	ENSORLP00000004479	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences.	0.995
H2MDZ5_ORYLA	pop1	ENSORLP00000016798	ENSORLP00000036393	Ribonuclease P and MRP subunit p25, b.	POP1 homolog, ribonuclease P/MRP subunit.	0.993
H2MDZ5_ORYLA	pop4	ENSORLP00000016798	ENSORLP00000025189	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.997
H2MDZ5_ORYLA	pop5	ENSORLP00000016798	ENSORLP00000018478	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.997
H2MDZ5_ORYLA	rpp30	ENSORLP00000016798	ENSORLP00000025307	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P/MRP 30 subunit.	0.986
H2MDZ5_ORYLA	rpp38	ENSORLP00000016798	ENSORLP00000011561	Ribonuclease P and MRP subunit p25, b.	Ribonuclease P/MRP 38 subunit.	0.997
H2MDZ5_ORYLA	rpp40	ENSORLP00000016798	ENSORLP00000027698	Ribonuclease P and MRP subunit p25, b.	Uncharacterized protein.	0.986
LOC101158762	H2MDZ5_ORYLA	ENSORLP00000006164	ENSORLP00000016798	Alba domain-containing protein.	Ribonuclease P and MRP subunit p25, b.	0.905
LOC101158762	LOC101167527	ENSORLP00000006164	ENSORLP00000001942	Alba domain-containing protein.	Ribonuclease P 21 subunit.	0.987
LOC101158762	Pop7	ENSORLP00000006164	ENSORLP00000004479	Alba domain-containing protein.	Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences.	0.979
LOC101158762	pop1	ENSORLP00000006164	ENSORLP00000036393	Alba domain-containing protein.	POP1 homolog, ribonuclease P/MRP subunit.	0.974
LOC101158762	pop4	ENSORLP00000006164	ENSORLP00000025189	Alba domain-containing protein.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.982
LOC101158762	pop5	ENSORLP00000006164	ENSORLP00000018478	Alba domain-containing protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.983
LOC101158762	rpp30	ENSORLP00000006164	ENSORLP00000025307	Alba domain-containing protein.	Ribonuclease P/MRP 30 subunit.	0.942
LOC101158762	rpp38	ENSORLP00000006164	ENSORLP00000011561	Alba domain-containing protein.	Ribonuclease P/MRP 38 subunit.	0.969
LOC101158762	rpp40	ENSORLP00000006164	ENSORLP00000027698	Alba domain-containing protein.	Uncharacterized protein.	0.655
LOC101167527	H2MDZ5_ORYLA	ENSORLP00000001942	ENSORLP00000016798	Ribonuclease P 21 subunit.	Ribonuclease P and MRP subunit p25, b.	0.994
LOC101167527	LOC101158762	ENSORLP00000001942	ENSORLP00000006164	Ribonuclease P 21 subunit.	Alba domain-containing protein.	0.987