(48 nodes) Cytoplasmic microtubule organization network (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101164937	Coiled-coil domain containing 88C. (1911 aa)
	H2L7L6_ORYLA	Uncharacterized protein. (298 aa)
	LOC101162196	Uncharacterized protein. (619 aa)
	LOC101172742	Coiled-coil domain containing 88B. (1615 aa)
	tubgcp6	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2. (1471 aa)
	CCDC88A	Coiled-coil domain containing 88A. (1843 aa)
	tubg1	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (451 aa)
	LOC101161659	Calmodulin regulated spectrin-associated protein 1a. (1531 aa)
	LOC101163173	Calmodulin regulated spectrin-associated protein family, member 3. (1433 aa)
	LOC101164071	Zgc:66447. (615 aa)
	fam193b	Family with sequence similarity 193 member B. (963 aa)
	TPPP	Tubulin polymerization promoting protein. (265 aa)
	kif19	Kinesin family member 19; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1019 aa)
	numa1	Uncharacterized protein. (2227 aa)
	spast	Spastin; Belongs to the AAA ATPase family. (474 aa)
	tubgcp2	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (876 aa)
	map10	HPHLAWLY domain-containing protein. (769 aa)
	LOC101155829	Coiled-coil domain containing 88Aa. (1394 aa)
	wdr73	Uncharacterized protein. (389 aa)
	hook2	Hook microtubule-tethering protein 2. (712 aa)
	tubgcp5	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (1007 aa)
	LOC101169647	Katanin_con80 domain-containing protein. (308 aa)
	cep120	Centrosomal protein 120. (974 aa)
	ccdc13	Coiled-coil domain containing 13. (605 aa)
	katnbl1	Katanin p80 subunit B-like 1. (303 aa)
	clip4	Uncharacterized protein. (700 aa)
	kpnb1	Karyopherin (importin) beta 1. (876 aa)
	clip3	CAP-GLY domain containing linker protein 3. (634 aa)
	LOC101159169	Uncharacterized protein. (1643 aa)
	camsap1	Calmodulin regulated spectrin-associated protein 1b. (1538 aa)
	camsap2	Calmodulin regulated spectrin-associated protein family, member 2a. (1446 aa)
	clip2	CAP-GLY domain containing linker protein 2. (970 aa)
	pcm1	Pericentriolar material 1. (2103 aa)
	slain2	SLAIN motif family, member 2. (613 aa)
	tubgcp4	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (668 aa)
	LOC101162870	Dynactin 1a. (1440 aa)
	chp1	Calcineurin-like EF-hand protein 1. (217 aa)
	ENSORLP00000033841	Uncharacterized protein. (116 aa)
	clip1	CAP-GLY domain containing linker protein 1a. (2225 aa)
	LOC101166919	Dynactin 1b. (1259 aa)
	tubgcp3	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (902 aa)
	hook1	Hook microtubule-tethering protein 1. (750 aa)
	HOOK3	Hook microtubule tethering protein 3. (742 aa)
	ENSORLP00000041230	Si:ch73-389b16.1. (131 aa)
	LOC101175684	Calmodulin regulated spectrin-associated protein family, member 2b. (1468 aa)
	cript	Cysteine-rich PDZ-binding protein. (101 aa)
	cib1	Calcium and integrin binding 1 (calmyrin). (189 aa)
	ENSORLP00000045133	Uncharacterized protein. (317 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000033841	H2L7L6_ORYLA	ENSORLP00000033841	ENSORLP00000001832	Uncharacterized protein.	Uncharacterized protein.	0.899
ENSORLP00000033841	LOC101162870	ENSORLP00000033841	ENSORLP00000031330	Uncharacterized protein.	Dynactin 1a.	0.627
ENSORLP00000033841	LOC101166919	ENSORLP00000033841	ENSORLP00000037337	Uncharacterized protein.	Dynactin 1b.	0.627
ENSORLP00000033841	clip1	ENSORLP00000033841	ENSORLP00000036679	Uncharacterized protein.	CAP-GLY domain containing linker protein 1a.	0.900
ENSORLP00000033841	clip2	ENSORLP00000033841	ENSORLP00000028851	Uncharacterized protein.	CAP-GLY domain containing linker protein 2.	0.574
ENSORLP00000041230	ccdc13	ENSORLP00000041230	ENSORLP00000022037	Si:ch73-389b16.1.	Coiled-coil domain containing 13.	0.535
ENSORLP00000045133	tubg1	ENSORLP00000045133	ENSORLP00000005556	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.940
ENSORLP00000045133	tubgcp2	ENSORLP00000045133	ENSORLP00000015848	Uncharacterized protein.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.961
ENSORLP00000045133	tubgcp3	ENSORLP00000045133	ENSORLP00000037429	Uncharacterized protein.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.954
ENSORLP00000045133	tubgcp4	ENSORLP00000045133	ENSORLP00000030716	Uncharacterized protein.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.968
ENSORLP00000045133	tubgcp5	ENSORLP00000045133	ENSORLP00000020051	Uncharacterized protein.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.966
ENSORLP00000045133	tubgcp6	ENSORLP00000045133	ENSORLP00000003539	Uncharacterized protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.919
H2L7L6_ORYLA	ENSORLP00000033841	ENSORLP00000001832	ENSORLP00000033841	Uncharacterized protein.	Uncharacterized protein.	0.899
H2L7L6_ORYLA	LOC101162870	ENSORLP00000001832	ENSORLP00000031330	Uncharacterized protein.	Dynactin 1a.	0.627
H2L7L6_ORYLA	LOC101166919	ENSORLP00000001832	ENSORLP00000037337	Uncharacterized protein.	Dynactin 1b.	0.627
HOOK3	cep120	ENSORLP00000040660	ENSORLP00000021375	Hook microtubule tethering protein 3.	Centrosomal protein 120.	0.428
HOOK3	hook2	ENSORLP00000040660	ENSORLP00000019519	Hook microtubule tethering protein 3.	Hook microtubule-tethering protein 2.	0.513
HOOK3	pcm1	ENSORLP00000040660	ENSORLP00000029107	Hook microtubule tethering protein 3.	Pericentriolar material 1.	0.411
LOC101162870	ENSORLP00000033841	ENSORLP00000031330	ENSORLP00000033841	Dynactin 1a.	Uncharacterized protein.	0.627
LOC101162870	H2L7L6_ORYLA	ENSORLP00000031330	ENSORLP00000001832	Dynactin 1a.	Uncharacterized protein.	0.627