13 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	atg12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
	ENSORLP00000045836	Ubiquitin-like domain-containing protein. (88 aa)
	urm1	Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically [...] (101 aa)
	UBL5	Ubiquitin like 5. (118 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	sumo4	Small ubiquitin-related modifier. (101 aa)
	ENSORLP00000027520	Ubiquitin-like domain-containing protein. (92 aa)
	ubc	Ubiquitin B. (782 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	sumo2-2	Small ubiquitin-related modifier. (95 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	sumo2	Small ubiquitin-related modifier. (96 aa)
	sumo1	Small ubiquitin-related modifier. (101 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000027520	H2M970_ORYLA	ENSORLP00000027520	ENSORLP00000015051	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.872
ENSORLP00000027520	UBL5	ENSORLP00000027520	ENSORLP00000039168	Ubiquitin-like domain-containing protein.	Ubiquitin like 5.	0.775
ENSORLP00000027520	rps27a	ENSORLP00000027520	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.930
ENSORLP00000027520	sumo1	ENSORLP00000027520	ENSORLP00000000767	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.835
ENSORLP00000027520	sumo2	ENSORLP00000027520	ENSORLP00000004077	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.781
ENSORLP00000027520	sumo2-2	ENSORLP00000027520	ENSORLP00000012260	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.781
ENSORLP00000027520	sumo4	ENSORLP00000027520	ENSORLP00000036220	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.781
ENSORLP00000027520	uba52	ENSORLP00000027520	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.869
ENSORLP00000027520	ubc	ENSORLP00000027520	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.833
ENSORLP00000045836	H2M970_ORYLA	ENSORLP00000045836	ENSORLP00000015051	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.869
ENSORLP00000045836	UBL5	ENSORLP00000045836	ENSORLP00000039168	Ubiquitin-like domain-containing protein.	Ubiquitin like 5.	0.775
ENSORLP00000045836	rps27a	ENSORLP00000045836	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.930
ENSORLP00000045836	sumo1	ENSORLP00000045836	ENSORLP00000000767	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.835
ENSORLP00000045836	sumo2	ENSORLP00000045836	ENSORLP00000004077	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.781
ENSORLP00000045836	sumo2-2	ENSORLP00000045836	ENSORLP00000012260	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.781
ENSORLP00000045836	sumo4	ENSORLP00000045836	ENSORLP00000036220	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.781
ENSORLP00000045836	uba52	ENSORLP00000045836	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.867
ENSORLP00000045836	ubc	ENSORLP00000045836	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.833
H2M970_ORYLA	ENSORLP00000027520	ENSORLP00000015051	ENSORLP00000027520	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.872
H2M970_ORYLA	ENSORLP00000045836	ENSORLP00000015051	ENSORLP00000045836	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.869