STRINGSTRING
atxn1l atxn1l bbs4 bbs4 brinp1 brinp1 LOC101156834 LOC101156834 LOC101156825 LOC101156825 LOC101167744 LOC101167744 mkks mkks slc6a4 slc6a4 ptchd1 ptchd1 gnb1l gnb1l LOC101157748 LOC101157748 en1 en1 LOC101164503 LOC101164503 pcm1 pcm1 rptor rptor cic cic LOC101172375 LOC101172375 LOC101166715 LOC101166715 eif4ebp2 eif4ebp2 atxn1 atxn1 ENSORLP00000035838 ENSORLP00000035838 ucn ucn H2L2U9_ORYLA H2L2U9_ORYLA LOC105354405 LOC105354405 cln8 cln8 shank3 shank3 LOC101161541 LOC101161541 LOC101165307 LOC101165307 LOC101167186 LOC101167186
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
atxn1lAtaxin 1-like. (815 aa)
bbs4Bardet-Biedl syndrome 4. (535 aa)
brinp1Bone morphogenetic protein/retinoic acid inducible neural-specific 1. (761 aa)
LOC101156834Capicua transcriptional repressor a. (2478 aa)
LOC101156825Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (579 aa)
LOC101167744Uncharacterized protein. (2049 aa)
mkksMcKusick-Kaufman syndrome. (564 aa)
slc6a4Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (671 aa)
ptchd1Patched domain containing 1. (970 aa)
gnb1lGuanine nucleotide binding protein (G protein), beta polypeptide 1-like. (328 aa)
LOC101157748Patched domain containing 4. (902 aa)
en1Homeobox protein engrailed-like. (280 aa)
LOC101164503Ataxin 1b. (827 aa)
pcm1Pericentriolar material 1. (2103 aa)
rptorRegulatory associated protein of MTOR, complex 1. (1372 aa)
cicCapicua transcriptional repressor b. (2702 aa)
LOC101172375Uncharacterized protein. (1694 aa)
LOC101166715Uncharacterized protein; Belongs to the potassium channel family. (719 aa)
eif4ebp2Eukaryotic translation initiation factor 4E binding protein 2. (126 aa)
atxn1Ataxin 1a. (800 aa)
ENSORLP00000035838FERM_f0 domain-containing protein. (122 aa)
ucnUrotensin 1. (132 aa)
H2L2U9_ORYLASH3 and multiple ankyrin repeat domains 2a. (1494 aa)
LOC105354405AXH domain-containing protein. (680 aa)
cln8CLN8 transmembrane ER and ERGIC protein. (350 aa)
shank3SH3 and multiple ankyrin repeat domains 3a. (1971 aa)
LOC101161541Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family. (695 aa)
LOC101165307SH3 and multiple ankyrin repeat domains 1. (2440 aa)
LOC101167186Methyl CpG binding protein 2. (1004 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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