71 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101174825	Fibroblast growth factor receptor substrate 3. (608 aa)
	ksr1	Kinase suppressor of ras 1a. (978 aa)
	LOC101157681	Uncharacterized protein. (1311 aa)
	LOC101165307	SH3 and multiple ankyrin repeat domains 1. (2440 aa)
	frs2	Fibroblast growth factor receptor substrate 2b. (526 aa)
	mapk8ip3	Mitogen-activated protein kinase 8 interacting protein 3. (1305 aa)
	Spag9	RH1 domain-containing protein. (266 aa)
	dok3	IRS-type PTB domain-containing protein. (490 aa)
	LOC105354262	Uncharacterized protein. (351 aa)
	LOC101173260	Docking protein 1b. (657 aa)
	SH2B2	SH2B adaptor protein 2. (722 aa)
	LOC101165203	SAM domain-containing protein. (1548 aa)
	LOC111948945	SAM domain-containing protein. (1548 aa)
	gab1	GRB2-associated binding protein 1. (795 aa)
	shank3	SH3 and multiple ankyrin repeat domains 3a. (1971 aa)
	tradd	Tnfrsf1a-associated via death domain. (321 aa)
	LOC101157091	PH domain-containing protein. (761 aa)
	LOC101174278	Low density lipoprotein receptor adaptor protein 1a. (294 aa)
	LOC101163074	Si:ch211-25d12.7. (261 aa)
	grip1	Glutamate receptor interacting protein 1. (1163 aa)
	grip2	Glutamate receptor interacting protein 2b. (1178 aa)
	nck2	Cytoplasmic protein. (398 aa)
	LOC110014047	IRS-type PTB domain-containing protein. (494 aa)
	wdr59	WD repeat domain 59. (986 aa)
	ol-gb1	WD_REPEATS_REGION domain-containing protein. (369 aa)
	sh2b1	SH2B adaptor protein 1. (913 aa)
	LOC101162205	Uncharacterized protein. (396 aa)
	ABI1	Abl-interactor 1a. (641 aa)
	ENSORLP00000035838	FERM_f0 domain-containing protein. (122 aa)
	ksr2	Kinase suppressor of ras 2. (960 aa)
	LOC101174926	Docking protein 2. (618 aa)
	POC1A	WD_REPEATS_REGION domain-containing protein. (469 aa)
	LOC101173221	Membrane associated guanylate kinase, WW and PDZ domain containing 2b. (1528 aa)
	mapk8ip2	Mitogen-activated protein kinase 8 interacting protein 2. (1261 aa)
	LOC110016423	Uncharacterized protein. (313 aa)
	LOC101169592	Dual specificity phosphatase 19b. (208 aa)
	LOC101172375	Uncharacterized protein. (1694 aa)
	ENSORLP00000031454	Uncharacterized protein. (108 aa)
	LOC105356386	DBB domain-containing protein. (589 aa)
	MAPK8IP1	Mitogen-activated protein kinase 8 interacting protein 1. (876 aa)
	gnb4	Guanine nucleotide binding protein (G protein), beta polypeptide 4b. (340 aa)
	lrrk2	Leucine-rich repeat kinase 2. (2241 aa)
	poc1b	POC1 centriolar protein B. (519 aa)
	LOC101164124	Suppressor of cytokine signaling 2. (197 aa)
	ldlrap1	Low density lipoprotein receptor adaptor protein 1b. (320 aa)
	magi2	Membrane associated guanylate kinase, WW and PDZ domain containing 2a. (1331 aa)
	LOC101162158	Signal transducing adaptor family member 2a. (364 aa)
	LOC101175519	Uncharacterized protein. (464 aa)
	LOC101168659	Dual specificity phosphatase 19a. (207 aa)
	LOC101156727	Guanine nucleotide binding protein (G protein), beta 5b. (395 aa)
	gnb3	Guanine nucleotide binding protein (G protein), beta polypeptide 3a. (340 aa)
	LOC101166248	Si:dkey-17m8.1. (988 aa)
	crkl	V-crk avian sarcoma virus CT10 oncogene homolog-like. (306 aa)
	H2M4A3_ORYLA	Sperm associated antigen 9a. (490 aa)
	LOC101166717	Glutamate receptor interacting protein 2a. (1081 aa)
	nck1	Cytoplasmic protein. (392 aa)
	crk	CRK proto-oncogene, adaptor protein. (315 aa)
	gab3	PH domain-containing protein. (558 aa)
	LOC101170217	Abl-interactor 1b. (496 aa)
	sav1	Salvador family WW domain containing protein 1. (391 aa)
	LOC101170447	Sterile alpha and TIR motif containing 1. (713 aa)
	LOC101167744	Uncharacterized protein. (2049 aa)
	LOC101175500	Guanine nucleotide binding protein (G protein), beta polypeptide 2. (340 aa)
	ol-gb	WD_REPEATS_REGION domain-containing protein. (342 aa)
	gnb5	Guanine nucleotide binding protein (G protein), beta 5a. (364 aa)
	LOC101168199	WD_REPEATS_REGION domain-containing protein. (340 aa)
	sh2b3	SH2B adaptor protein 3. (724 aa)
	LOC101163907	Uncharacterized protein. (386 aa)
	gab2	GRB2-associated binding protein 2. (674 aa)
	sh3rf1	SH3 domain containing ring finger 1. (880 aa)
	H2L2U9_ORYLA	SH3 and multiple ankyrin repeat domains 2a. (1494 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABI1	LOC101170217	ENSORLP00000037107	ENSORLP00000011940	Abl-interactor 1a.	Abl-interactor 1b.	0.901
ABI1	LOC101175519	ENSORLP00000037107	ENSORLP00000017875	Abl-interactor 1a.	Uncharacterized protein.	0.696
ABI1	LOC110016423	ENSORLP00000037107	ENSORLP00000033986	Abl-interactor 1a.	Uncharacterized protein.	0.520
ABI1	crk	ENSORLP00000037107	ENSORLP00000012262	Abl-interactor 1a.	CRK proto-oncogene, adaptor protein.	0.520
ABI1	crkl	ENSORLP00000037107	ENSORLP00000013917	Abl-interactor 1a.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.520
ABI1	nck1	ENSORLP00000037107	ENSORLP00000012449	Abl-interactor 1a.	Cytoplasmic protein.	0.673
ABI1	nck2	ENSORLP00000037107	ENSORLP00000039494	Abl-interactor 1a.	Cytoplasmic protein.	0.673
ENSORLP00000031454	LOC110016423	ENSORLP00000031454	ENSORLP00000033986	Uncharacterized protein.	Uncharacterized protein.	0.474
ENSORLP00000031454	crk	ENSORLP00000031454	ENSORLP00000012262	Uncharacterized protein.	CRK proto-oncogene, adaptor protein.	0.474
ENSORLP00000031454	crkl	ENSORLP00000031454	ENSORLP00000013917	Uncharacterized protein.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.474
ENSORLP00000031454	nck1	ENSORLP00000031454	ENSORLP00000012449	Uncharacterized protein.	Cytoplasmic protein.	0.617
ENSORLP00000031454	nck2	ENSORLP00000031454	ENSORLP00000039494	Uncharacterized protein.	Cytoplasmic protein.	0.617
ENSORLP00000035838	H2L2U9_ORYLA	ENSORLP00000035838	ENSORLP00000000049	FERM_f0 domain-containing protein.	SH3 and multiple ankyrin repeat domains 2a.	0.902
H2L2U9_ORYLA	ENSORLP00000035838	ENSORLP00000000049	ENSORLP00000035838	SH3 and multiple ankyrin repeat domains 2a.	FERM_f0 domain-containing protein.	0.902
H2M4A3_ORYLA	MAPK8IP1	ENSORLP00000013267	ENSORLP00000029434	Sperm associated antigen 9a.	Mitogen-activated protein kinase 8 interacting protein 1.	0.417
H2M4A3_ORYLA	Spag9	ENSORLP00000013267	ENSORLP00000044428	Sperm associated antigen 9a.	RH1 domain-containing protein.	0.918
H2M4A3_ORYLA	mapk8ip2	ENSORLP00000013267	ENSORLP00000035388	Sperm associated antigen 9a.	Mitogen-activated protein kinase 8 interacting protein 2.	0.417
LOC101156727	LOC101168199	ENSORLP00000016014	ENSORLP00000004503	Guanine nucleotide binding protein (G protein), beta 5b.	WD_REPEATS_REGION domain-containing protein.	0.712
LOC101156727	LOC101175500	ENSORLP00000016014	ENSORLP00000009914	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.708
LOC101156727	gnb3	ENSORLP00000016014	ENSORLP00000015882	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), beta polypeptide 3a.	0.577